DN617471

Overview
NameDN617471
Unique NameDN617471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:36..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 58/224 (25.89%), Postives = 98/224 (43.75%), Query Frame = 1
Query:  145 SGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKG-GIRFTVNGHSY---FNLVLVTNVGGAGDVHSVSI-KGSKTGWQAMSRNWGQNWQSNSYLNGP-SLSFQVTASDG-RTVTSNHVVPANWQFGQTFE 795
            +  AT+Y              YG           + +S  L+NNG  CG+CY+++C+  P  C    + V AT+      +   D   +   P  +  MA P   +   Y  G+V + ++RIPC   G  + + ++  SY   +  +LV  VGG  D+ +V + +     W+ M R +G      +   G  +L F V  S G   + S + +PA+W  G T++
Sbjct:   29 NSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPH-CSEEGVYVVATD------SGEGDGTDFILSPKAYGRMARPG-TENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYD 244          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 62/234 (26.50%), Postives = 98/234 (41.88%), Query Frame = 1
Query:  124 DYGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVN----GHSYFNLVLVTNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNS--YLNGPSLSFQVTASDGRTVTSNHVVPANWQ 777
            +YG  W    +T+Y                Y ++    +   T   +T +F +G  CGSC+E+KC + P+ C    I V  T          +DN     P   HFD++  AF  +A+         AG + + FRR+ C    G + T +     +  +  +LV  V G GDV +V IK   K  W  +  +WG  W+ ++   L GP  + + T   G       V+P  W+
Sbjct:   42 EYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKC-SKPESCSGEPITVHIT----------DDNEEPIAP--YHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGP-FTVRYTTEGGTKAEFEDVIPEGWK 261          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 60/239 (25.10%), Postives = 101/239 (42.26%), Query Frame = 1
Query:  127 YGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVN----GHSYFNLVLVTNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNS--YLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFE 795
            YG  W    +T+Y                Y ++    +   T   +T +F +G  CGSC+E+KC   P+ C          +  P  + +++DN     P   HFD++  AF  +A+         AG + + FRR+ C    G + T +     +  +  +LV  + G GDV +V IK   K  W  +  +WG  W+ ++   L GP  + + T   G    +  V+P  W+    +E
Sbjct:   39 YGDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESC----------SGEPVTVHITDDNEEPIAP--YHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTGP-FTVRYTTEGGTKGEAEDVIPEGWKADTAYE 263          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 55/209 (26.32%), Postives = 93/209 (44.50%), Query Frame = 1
Query:  208 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAF-LQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNV-----GGAGDVHSVSIKG-SKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTAS---DGRTV-TSNHVVPANWQFGQTFEGG 801
            YG+L +   G + AA S ALF  G+ CG+C++++C+ D K C      V  T     + A S +          +  MA P    Q+   RA  V + ++R+PC    G   ++            ++     GG  D+ +V +     + W+ M+R++G  W +     GP L F+V  +   DG+ V     V+P  W  G+ ++ G
Sbjct:   56 YGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCK-DGKLCSTAGAKVVVT-----DEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRA--VDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGP-LQFRVVVTGGYDGKWVWADGEVLPRRWTAGRVYDAG 255          
The following BLAST results are available for this feature:
BLAST of DN617471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EXLB1_ARATH7.347e-1225.89Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
MPAP1_PHAAQ2.792e-1126.50Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAH1_HOLLA3.646e-1125.10Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXLA2_ORYSJ8.123e-1126.32Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617471 ID=DN617471; Name=DN617471; organism=Citrus sinensis; type=EST; length=803bp
CTTAACAAAAAAACACATAAACATAAGCAGCCAGCAGTAGCAGCCATGGC
CAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGCTCAATT
TTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGC
CATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGC
TTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACACTGCAG
CACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTAT
GAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCAT
TGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACA
ACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCC
GCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTT
CAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATG
GACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGA
GATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAAT
GTCAAGGAACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCC
CAAGTCTTTCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGC
AACCATGTTGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGG
TCA
back to top