DN617470

Overview
NameDN617470
Unique NameDN617470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:106..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NG  YFNLVL+TNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF+VT SD RT TS N  PA W
Sbjct:  170 GVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.133e-28
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRF ++GH YF LV VTNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF V   DGR VT+ NV P+NW
Sbjct:  161 GIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NG  YFNLVLVTNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF+VT+SD R+ TS N+ PANW
Sbjct:  163 GIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NG+SYF LVL+TNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF VT++ G+T+   +V P+NW
Sbjct:  156 GVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RF +NG  YF LV + NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP++W
Sbjct:  159 GVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.675e-27
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT++G  YF LV V NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF+V   D R VT  N+ P+NW
Sbjct:  155 GIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.312e-25
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRF + GH Y+ LVLVTNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF+V A DG  VT+ +V PANW
Sbjct:  159 GIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.545e-24
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NG +YF LVL++NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YLNGQSLSF+V  SDG    + NVVP+NW
Sbjct:  161 GMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNW 243          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.018e-24
Identity = 49/82 (59.76%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTV+G +YF LVL+TNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF+VT++ G+T+  N+VVP  W
Sbjct:  160 GVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.443e-24
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTV G  YF LVLVTNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF+VTA+DG+T+    VVP +W
Sbjct:  167 GVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
The following BLAST results are available for this feature:
BLAST of DN617470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ORYSJ3.009e-2868.29Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ5.133e-2869.51Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH6.704e-2868.29Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP12_ORYSJ6.704e-2862.20Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.143e-2765.85Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP33_ORYSJ5.675e-2768.29Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ5.312e-2562.20Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP17_ARATH1.545e-2461.45Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP28_ORYSJ2.018e-2459.76Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ3.443e-2460.71Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617470 ID=DN617470; Name=DN617470; organism=Citrus sinensis; type=EST; length=511bp
ATTATACCTCGTTCATCTCAATTGGAGTAATAACTATATATAGAACACAA
TCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAA
CAAGACAGGCCACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCA
CCCTTTCTCCCTCACAAACACAATGCCAAATTCAATTAAATATACAATTT
CTGATTCACTTTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCT
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