DN617470

Overview
NameDN617470
Unique NameDN617470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.443e-24
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RF V G S+F  VL++NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF++T+SDG+T+T+ NVVP  W
Sbjct:  163 GVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NGH YFNLVLVTNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF+VT  DG+T+   N+VP+ W
Sbjct:  167 GVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NGH YFNLVLVTNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF+VT  DG+T+   N+VP+ W
Sbjct:  183 GVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+ G +YF LVLVTN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF VT++ G+T+  ++VVPA W
Sbjct:  154 GVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NG +YF LVLVTN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF VT++ G+T+  ++ VPA W
Sbjct:  154 GVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = -2
Query:  265 IRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 507
            +RFTV+G   F  VL+TNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF+VT+SD  TVTS NV P NW
Sbjct:  172 MRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.889e-22
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+ G ++F LVLV+NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF VT++ G+T+   NVVP+ W
Sbjct:  160 GIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NGH YFNLVLVTNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF+VT  DG+T+   N+VP+ W
Sbjct:  185 GVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF+VT +DG+T+   NVV   W
Sbjct:  167 GVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.209e-22
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RF +NG +YF LVLVTN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF VT++ G+T+  ++ VPA W
Sbjct:  145 GVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
The following BLAST results are available for this feature:
BLAST of DN617470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP10_ORYSJ3.443e-2459.76Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.232e-2359.04Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.807e-2359.04Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ4.972e-2357.32Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ6.493e-2356.10Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH8.480e-2360.49Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP25_ORYSJ1.889e-2258.54Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.467e-2257.83Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ3.223e-2255.42Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ4.209e-2254.88Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617470 ID=DN617470; Name=DN617470; organism=Citrus sinensis; type=EST; length=511bp
ATTATACCTCGTTCATCTCAATTGGAGTAATAACTATATATAGAACACAA
TCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAA
CAAGACAGGCCACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCA
CCCTTTCTCCCTCACAAACACAATGCCAAATTCAATTAAATATACAATTT
CTGATTCACTTTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCT
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