DN617470

Overview
NameDN617470
Unique NameDN617470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:106..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+NGH YF LVLVTNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF+VT +D +T+   NVVP  W
Sbjct:  172 GLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F   G+ YF +VL+ NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF+VT SDG T    NV+P NW
Sbjct:  180 GVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-21
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF+VT SDG T   NNV+P NW
Sbjct:  183 GVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-21
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF+VT SDG T   NNV+P NW
Sbjct:  176 GVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F   G+ YF +VL+ NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF+VT +DG T    NV+P NW
Sbjct:  186 GVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+ G   FN+V+++NVGG G V SV+++GSK   W  M+RNWG NWQS+  L GQ LSF+VT +D +T T  NVVP++W
Sbjct:  156 GVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.037e-20
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIR+T+ G+ YFNLV+V+NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL+F+V   D R  TS +V+P +W
Sbjct:  174 GIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.768e-20
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+ G + F  VL+TNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ LSF+VT   GRTV + +V P +W
Sbjct:  166 GMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTV G +YF LVL+TNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF VT + G+ +   +V PA W
Sbjct:  161 GVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTV G  +F LVLV NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF VT + G+ +   +V PA W
Sbjct:  160 GVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
The following BLAST results are available for this feature:
BLAST of DN617470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP23_ORYSJ9.376e-2255.42Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH9.376e-2254.88Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ARATH2.728e-2152.44Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH2.728e-2152.44Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP26_ARATH6.077e-2152.44Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP12_ARATH6.077e-2154.22Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP32_ORYSJ1.037e-2053.01Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.768e-2053.66Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ2.309e-2057.32Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ2.309e-2054.88Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617470 ID=DN617470; Name=DN617470; organism=Citrus sinensis; type=EST; length=511bp
ATTATACCTCGTTCATCTCAATTGGAGTAATAACTATATATAGAACACAA
TCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAA
CAAGACAGGCCACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCA
CCCTTTCTCCCTCACAAACACAATGCCAAATTCAATTAAATATACAATTT
CTGATTCACTTTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCT
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