DN617470

Overview
NameDN617470
Unique NameDN617470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTA-SDGRTVTSNNVVPANW 510
            G+RF   G+SY+ L+ V NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF+VT+ + G T+ + NV PANW
Sbjct:  167 GMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.146e-19
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFT+ G +YF LVL++NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F VT++ G+T+   N+VPA W
Sbjct:  165 GVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N  L GQS+S +VT SDG T    +V+PA+W
Sbjct:  169 GVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.162e-18
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RF+++G S+F  VL++NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF+VT   G+T+ S +V P  W
Sbjct:  162 GLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGR-TVTSNNVVPANW 510
            GIRF   G+ Y+ LV V NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF++T+   R T+ + N  PA+W
Sbjct:  162 GIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GI++T+ G+  +N+V+V NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F+V   D R  TS  V P +W
Sbjct:  196 GIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF++T SDG      +V P +W
Sbjct:  218 GVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTA-SDGRTVTSNNVVPANW 510
            G+RF + G+ Y+ L  V NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF+VT+ + G+T+ +  V PA+W
Sbjct:  170 GLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
The following BLAST results are available for this feature:
BLAST of DN617470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ARATH8.776e-2054.22Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP15_ORYSJ1.146e-1951.22Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH4.355e-1953.66Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH2.162e-1851.22Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP18_ARATH3.121e-1750.60Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP26_ORYSJ2.642e-1644.58Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH3.451e-1645.12Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP30_ORYSJ7.196e-1445.24Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617470 ID=DN617470; Name=DN617470; organism=Citrus sinensis; type=EST; length=511bp
ATTATACCTCGTTCATCTCAATTGGAGTAATAACTATATATAGAACACAA
TCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAA
CAAGACAGGCCACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCA
CCCTTTCTCCCTCACAAACACAATGCCAAATTCAATTAAATATACAATTT
CTGATTCACTTTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCT
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