DN617469

Overview
NameDN617469
Unique NameDN617469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8229 contig Csv1_Contig8229:5..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.100e-36
Identity = 75/158 (47.47%), Postives = 113/158 (71.52%), Query Frame = 2
Query:   50 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            MGQG   G +++                 +EP    ++ GRK+RK  GP  A +LP + P ++CKL+LL++ERIKD+LL+EEEFV+N E LKP E+K EE++ +++++RG+P+S+G LEE+ID++HAIV+S   P+YYV ILSFVD++ LEPGC++L+
Sbjct:    1 MGQGVSSGQDKKKKKGSNQKPK-------YEPPVQ-SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLL 149          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.029e-34
Identity = 69/132 (52.27%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKP---QEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            ++P  PP + G+K +K++G E + +LP +TP SKCKL+ LKLERIKDYLLME+EF+ N +  +P   +  K + D   +++LRG P++VGNLEE+ID+NHAIVSS+VGPE+YV I+SFVD+ +L  G  +L+
Sbjct:   21 YQPPPPPTQFGKK-KKRRGAETSTKLPVITPHSKCKLKQLKLERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLL 151          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  170 RKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            R++R+ K  +AA++ P V PL KCKLR LKL+++   L +E+  ++  E  K   E +   +  V+ LRGSP+SVG LEE +D++H I+++ VG EYYV I+SFVD+D LEPGC +L+
Sbjct:   20 RRRRRVKEGKAASKPPQVYPLMKCKLRYLKLKKLAHLLSLEDNILSLCEPDK-SSEGSNSQKHVVEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLL 136          
The following BLAST results are available for this feature:
BLAST of DN617469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PRS4_YEAST1.100e-3647.4726S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_DICDI1.029e-3452.2726S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4_ENCCU2.151e-2446.6126S protease regulatory subunit 4 homolog OS=Encep... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617469 ID=DN617469; Name=DN617469; organism=Citrus sinensis; type=EST; length=524bp
CTCGCTTTTATTCTCTCACTTAATCGAATTCGAAATCTAGTGTGAAGCCA
TGGGTCAGGGAACACCGGGAGGTCTGAACCGGCAAGGTCCAGGAGGTGAC
CGCAAGGGTGATGGAGCGGATAAGAAAGATAAAAAATTCGAGCCTGCAGC
TCCTCCGGCCCGTGTGGGCCGCAAGCAACGAAAGCAGAAAGGACCAGAAG
CGGCGGCACGCCTTCCGACCGTTACGCCGCTGAGTAAGTGCAAGCTGAGG
CTTTTAAAGCTTGAGAGGATAAAAGATTATCTCTTGATGGAAGAGGAGTT
TGTTACGAATCAGGAGAGATTGAAGCCGCAGGAAGAGAAGGCGGAGGAAG
ATCGGTCAAAGGTTGACGATCTGAGAGGTTCGCCGATGAGCGTTGGTAAT
TTGGAGGAGTTGATTGATGAGAATCACGCCATTGTTTCGTCGTCGGTGGG
GCCCGAGTATTACGTCGGGATTTTGTCCTTTGTTGATAGGGATCAGCTGG
AGCCTGGCTGTGCTATTTTGATGC
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