DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.060e-23
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = -1
Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKI F  PD+ T+++I  IHTS+M L++DVNLE  V  KD+ SGADI+A+CTEAGLLALRERRM+VT  DF            E   EGLY+
Sbjct:  341 PGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.361e-23
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = -1
Query:  182 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLY 469
            PGRIDRKIEF +PD  T+++IF IHTSRMTL + VN+E  +  K++ SGADIKAICTEAG++ALRERR  VT  DF           ++ V  GLY
Sbjct:  328 PGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDFISAREKVFFSKQKMVSAGLY 423          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.172e-22
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  188 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEG 469
            PGRIDRKI F  PD  T+R+IF IHTS+M L +DVNLEE +  KD+ SGA+IKAI +EAGLLALRERRM+V   DF            EG P G
Sbjct:  351 PGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAG 444          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IFQ+ TS+M L+D+V+LE++V   D+ SGA+I++IC EAG+ A+R+ R  +   DF
Sbjct:  309 PGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDF 384          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   T++M L+++V+LEEFV   D  SGADI AIC EAG+ A+RE R  V   DF
Sbjct:  321 PGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDF 396          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = -1
Query:  242 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 466
            GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE     D+F+GA +KA+C EAG+LALR    +VTH DF
Sbjct:  336 GRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDF 410          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PRS4_YEAST1.060e-2357.7326S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_ENCCU2.361e-2356.2526S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_SCHPO1.172e-2258.5126S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS6B_DICDI6.652e-1853.9526S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_RAT1.482e-1755.2626S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MANSE1.482e-1757.8926S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_MACFA1.482e-1755.2626S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.482e-1755.2626S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.482e-1755.2626S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6A_ORYSJ1.482e-1754.6726S protease regulatory subunit 6A homolog OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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