DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.124e-12
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  245 PGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR+DRKIEFP   D + RR +FQ  T++M L+ +V+L+ F+M  D  SGA I AI  +AGLLA+R+ R  +  +D
Sbjct:  293 PGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSD 368          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE P P+   R RI +IH   M +AD V+  +      EFSGA + ++ TEAG+ A+R+ R +V   DF
Sbjct:  311 PGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDF 386          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIE PLP+   R  + +IH + +T   DV+ E      D F+ AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  296 PGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDF 371          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE  +PD   R  I +IHT +M L + V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  307 PGRFDRIIEISMPDEDGRLEILKIHTEKMNLKN-VDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLP+ + R+ IF+I+  +M    ++  +      + FSGA+IK +CTEAG +A+R  R  V  TD
Sbjct:  293 PGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  307 PGRFDRIIEISMPDEDGRLEILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR+DRK+E PLP+   R  IF+IHT+++    + + E  V   D F+GADI+   TEAG  A+R+ R  +   D
Sbjct:  340 PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLP ++ R  I  IHT +  +A DV+LE      + FSGAD+KA+  EAG  A+R     +T  D
Sbjct:  298 PGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDD 372          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PRS6B_SCHPO7.124e-1248.6826S protease regulatory subunit 6B homolog OS=Schi... [more]
PSMR1_HALSA1.215e-1143.42Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS10_DICDI1.587e-1143.4226S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR_METM73.536e-1146.05Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_SULTO4.618e-1142.67Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METMP6.031e-1146.05Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS10_YEAST6.031e-1142.6726S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_AERPE7.876e-1145.33Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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