DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:  242 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 466
            GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE     D+F+GA +KA+C EAG+LALR    +V H DF
Sbjct:  330 GRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P +  R  I +IH+ +M L   +NL +     +  SGAD+K +CTEAG+ ALRERR+ VT  DF
Sbjct:  307 PGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDF 382          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R +FQ+ T++M L D+V+LE++V   D+ S A+I AIC EAG+ A+R+ R  +   DF
Sbjct:  319 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDF 394          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = -1
Query:  242 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 466
            GR+DRKIEFPLP   +R +I QIH+ +MT  DD+N +E     DEF+GA +KA+  EAG++ALR  +  V H DF
Sbjct:  341 GRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDF 415          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -1
Query:  245 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 466
            GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE     D+F+GA  KA+C EAG++ALR    ++TH D
Sbjct:  349 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHED 422          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR I+ PLPD + R  IF+IHT  M LA+DV+L++     +  SGADIKAICTEAG++A+RE R  VT  DF
Sbjct:  338 PGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDF 413          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = -1
Query:  242 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 466
            GR+DRKIEFPLP+ + R  I QIH+ +M ++ DVN +E     ++F+GA +KA+C EAG++ALR    ++ H DF
Sbjct:  328 GRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDF 402          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE PLP+   RR I +IHTS M LA++V++E      D  SGAD+KAICTEAG+ A+R+ R +VT  DF
Sbjct:  310 PGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADF 385          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE P PD K R  I +IHT +M LA+DVNLEE     +   GA++KAICTEAG+ A+RE R  VT  DF
Sbjct:  329 PGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDF 404          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC   G+LA+RE    V   DF
Sbjct:  324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDF 399          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PS6AB_ARATH1.255e-1653.3326S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS8_YEAST1.255e-1652.6326S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS6B_SOLTU1.255e-1651.3226S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6A_YEAST1.255e-1652.0026S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_MOUSE1.639e-1651.3526S protease regulatory subunit 6A OS=Mus musculus... [more]
PSMR_METKA2.140e-1656.58Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PRS6A_DICDI3.650e-1648.0026S protease regulatory subunit 6A homolog OS=Dict... [more]
PSMR_METTH4.767e-1655.26Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METJA8.132e-1656.58Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS6B_MOUSE8.132e-1652.6326S protease regulatory subunit 6B OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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