DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEFPLPD + +R +F   TS+M+L D V++E  V   ++ S ADI +IC EAG+LA+R  R  VT  DF
Sbjct:  293 PGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDF 368          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF
Sbjct:  321 PGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF
Sbjct:  321 PGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = -1
Query:  242 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 466
            GR+DRK+EFPLP+ + R  I +IH+ +M + DD+N EE     DE++GA +K++C EAG++ALR+   K+ H  F
Sbjct:  345 GRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHF 419          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  302 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 377          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P  + R  I +IH+  M L   ++L+      +  SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  305 PGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDF 380          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  308 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  308 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  308 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  304 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 379          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PRS6B_ENCCU8.132e-1652.6326S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS8B_ARATH1.812e-1551.3226S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH1.812e-1551.3226S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS6A_SCHPO1.812e-1546.6726S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS8_XENLA4.036e-1551.3226S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_SCHPO4.036e-1550.0026S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_RAT4.036e-1551.3226S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG4.036e-1551.3226S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE4.036e-1551.3226S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_MANSE4.036e-1551.3226S protease regulatory subunit 8 OS=Manduca sexta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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