DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGRIDRKIEFP P    R  I +IH+ +M L   +NL++     +  SGA++KA+CTEAG+ ALRERR+ V+  DF
Sbjct:  305 PGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDF 380          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  272 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRE 469
            PGR+DR I  P+PD K R  IF+IHT  M LA+DVNLEE     + ++GADI+A+C EA +LA+RE
Sbjct:  609 PGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRE 674          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD K R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMND 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRK+EF LPD++ R  IF IH   M+ A D+  E         +GADI+++CTEAG+ A+R RR  V+  DF
Sbjct:  329 PGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDF 404          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  245 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTD 469
            PGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  293 PGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PRS8_DICDI1.534e-1451.3226S protease regulatory subunit 8 OS=Dictyostelium... [more]
Y1156_METJA2.616e-1456.06Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PSMR_SULSO2.616e-1450.67Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS7_DICDI3.417e-1447.3726S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_SULIY7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA7.611e-1449.33Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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