DN617468

Overview
NameDN617468
Unique NameDN617468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:621..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  272 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRE 469
            PGR++R I  P PD K R  IF+IH     LADDVN+EE     + +SGADI+A+C EAG+LA+RE
Sbjct:  612 PGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRE 677          

HSP 2 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = -1
Query:  275 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALR 469
            PGR DR+IE  +PD + R+ I +IHT +M LA+DV+LEE     + F GAD++A+C EA + ALR
Sbjct:  338 PGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALR 402          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR I+ P+P  + R +I +IH  +M LADDV+L +  +  DE SGAD+ AI  EAG+ A+R  R  V  +DF
Sbjct:  318 PGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDF 393          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE PLPD + R  I ++HT RM L   V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  299 PGRFDRLIEVPLPDFEGRLEILKVHTRRMKLKG-VDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDF 373          
BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  242 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 469
            PGR DR IE PLPD + R  I ++HT RM L + V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  299 PGRFDRLIEVPLPDFEGRLEILKVHTRRMKLKN-VDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDF 373          
The following BLAST results are available for this feature:
BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PRS7_XENLA9.941e-1446.0526S protease regulatory subunit 7 OS=Xenopus laevi... [more]
Y1297_ARCFU1.298e-1354.55Cell division cycle protein 48 homolog AF_1297 OS=... [more]
PSMR_UNCMA1.298e-1347.37Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS7_RAT1.298e-1346.0526S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_MOUSE1.298e-1346.0526S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA1.298e-1346.0526S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN1.298e-1346.0526S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN1.298e-1346.0526S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PSMR_PYRHO2.892e-1352.63Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB2.892e-1352.63Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG
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