DN617461

Overview
NameDN617461
Unique NameDN617461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1279..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+TIN DLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  345 PGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK QA
Sbjct:  345 PGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKTQA 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  407 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 550
            PGMM+IN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  345 PGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGMMTIN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  345 PGMMTINLDLKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  407 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 550
            PGMM+IN DLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWE PQ
Sbjct:  345 PGMMSINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWENPQ 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DL RGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KP+A
Sbjct:  345 PGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPEA 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  348 PGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  348 PGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+TIN DLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  345 PGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.460e-21
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQA
Sbjct:  345 PGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQA 393          
The following BLAST results are available for this feature:
BLAST of DN617461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK2_ELAUM1.117e-2189.80S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK2_VITVI1.459e-2191.84S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK1_SOLLC1.459e-2193.75S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_POPTR2.489e-2195.92S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK_SOLBR5.546e-2191.67S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK2_SOLLC5.546e-2187.76S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK1_ORYSJ5.546e-2187.76S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI5.546e-2187.76S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK2_PINCO7.243e-2189.80S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK2_DAUCA9.460e-2189.80S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617461 ID=DN617461; Name=DN617461; organism=Citrus sinensis; type=EST; length=551bp
GGCAAACCGCACACACATAGAGTGATATTAATAAGCAAAACAACTATTGG
CTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCTAC
ATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGGCA
CCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGACAT
GGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAA
GGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCTTA
GTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACCA
ATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAAAT
TTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGA
AGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAAC
CTGCCATTACCGCCCCTTTTGAGATCCNAATTGATGGTCATCATTCCTGG
C
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