DN617461

Overview
NameDN617461
Unique NameDN617461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1279..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.366e-19
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+TIN DLKRGGN RF+KTAAYGHFGRDDPDFTWEVVKPLKW+KP A
Sbjct:  348 PGMITINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKPAA 395          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.784e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLKRGGNGR  KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  345 PGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.784e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  413 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 550
            PGM++IN DLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  346 PGMISINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 391          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = -2
Query:  407 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 550
            PGM+ IN DLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct:  345 PGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  413 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 550
            PGM++IN DL RGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  320 PGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -2
Query:  416 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 550
            PGM++IN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  346 PGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -2
Query:  416 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 550
            PGM++IN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  346 PGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DLKRGG+GR+LKTAAYGHFGRD  DFTWEVVKPLKWEKP A
Sbjct:  348 PGMIIINLDLKRGGSGRYLKTAAYGHFGRDGADFTWEVVKPLKWEKPSA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -2
Query:  416 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 550
            PGM++IN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  346 PGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  345 PGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          
The following BLAST results are available for this feature:
BLAST of DN617461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_DENCR1.366e-1987.76S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK_PINBN1.784e-1985.71S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK_PHALU1.784e-1989.13S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]
METK4_VITVI2.330e-1989.58S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK1_PEA2.330e-1989.13S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK_POPDE5.191e-1988.89S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK5_POPTR5.191e-1988.89S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK4_HORVU5.191e-1983.67S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK3_POPTR5.191e-1988.89S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK2_SUASA6.779e-1983.67S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617461 ID=DN617461; Name=DN617461; organism=Citrus sinensis; type=EST; length=551bp
GGCAAACCGCACACACATAGAGTGATATTAATAAGCAAAACAACTATTGG
CTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCTAC
ATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGGCA
CCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGACAT
GGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAA
GGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCTTA
GTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACCA
ATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAAAT
TTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGA
AGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAAC
CTGCCATTACCGCCCCTTTTGAGATCCNAATTGATGGTCATCATTCCTGG
C
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