DN617461

Overview
NameDN617461
Unique NameDN617461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1279..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = -2
Query:  428 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 550
            PGM+TIN DLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  345 PGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = -2
Query:  413 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 550
            PGM++IN DLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  347 PGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  349 PGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  349 PGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGMM IN DLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  345 PGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  349 PGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ IN DL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  349 PGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = -2
Query:  413 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 550
            PGM++IN DLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  347 PGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGMM IN DLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  345 PGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+ I  DLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  349 PGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
The following BLAST results are available for this feature:
BLAST of DN617461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_CARPA6.345e-1792.68S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK1_PICSI6.345e-1782.61S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK4_ATRNU8.287e-1779.59S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK3_ATRNU8.287e-1779.59S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK3_ARATH8.287e-1790.70S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK2_ATRNU8.287e-1779.59S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU8.287e-1779.59S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK_MEDFA1.082e-1684.78S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK4_BRAJU1.082e-1688.37S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK2_DIACA2.411e-1677.55S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617461 ID=DN617461; Name=DN617461; organism=Citrus sinensis; type=EST; length=551bp
GGCAAACCGCACACACATAGAGTGATATTAATAAGCAAAACAACTATTGG
CTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCTAC
ATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGGCA
CCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGACAT
GGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAA
GGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCTTA
GTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACCA
ATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAAAT
TTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGA
AGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAAC
CTGCCATTACCGCCCCTTTTGAGATCCNAATTGATGGTCATCATTCCTGG
C
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