DN617461

Overview
NameDN617461
Unique NameDN617461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1279..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM+TIN DLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  347 PGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  347 PGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PG++TIN  LKRGG  R+LKTAAYGHFGRDDPDFTWEVVKPL+ EKP A
Sbjct:  346 PGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKPAA 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K  A
Sbjct:  347 PGMISINLDLKKGGN-RFIKTAAYGHFGREDADFTWEVVKPLKFDKASA 394          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = -2
Query:  413 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 550
            PGM++IN DLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  345 PGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGM++IN DLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  347 PGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  345 PGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGMM+IN DL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  345 PGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGMM+IN DL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  345 PGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DLKRGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  345 PGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of DN617461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK1_HORVU2.411e-1679.59S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK3_HORVU7.015e-1677.55S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_MUSAC9.162e-1679.59S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK1_TRIMO2.041e-1575.51S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK1_VITVI2.666e-1580.43S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK2_HORVU3.482e-1575.51S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK3_VITVI1.013e-1483.72S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_SOLLC2.947e-1481.40S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU2.947e-1481.40S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_ACTCH2.947e-1481.40S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617461 ID=DN617461; Name=DN617461; organism=Citrus sinensis; type=EST; length=551bp
GGCAAACCGCACACACATAGAGTGATATTAATAAGCAAAACAACTATTGG
CTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCTAC
ATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGGCA
CCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGACAT
GGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAA
GGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCTTA
GTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACCA
ATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAAAT
TTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGA
AGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAAC
CTGCCATTACCGCCCCTTTTGAGATCCNAATTGATGGTCATCATTCCTGG
C
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