DN617461

Overview
NameDN617461
Unique NameDN617461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1279..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.701e-14
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = -2
Query:  440 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 550
            PGM+ IN DLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  345 PGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          

HSP 2 Score: 20.4014 bits (41), Expect = 4.701e-14
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  405 SCEAPQVGKASS 440
            S EAPQVG+ SS
Sbjct:  382 SGEAPQVGQTSS 393          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  345 PGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGMM+IN DL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  345 PGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = -2
Query:  404 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 550
            PGMM+IN DL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  345 PGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGMM+IN DL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  345 PGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PG++  N DLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  348 PGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.482e-13
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  345 PGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.482e-13
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DLKRGGN R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  345 PGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of DN617461 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = -2
Query:  422 PGMMTINXDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 550
            PGM+ IN DL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  345 PGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
The following BLAST results are available for this feature:
BLAST of DN617461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_CAMSI4.701e-1489.19S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK4_POPTR5.028e-1479.07S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK2_PETHY6.566e-1475.51S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK1_PETHY6.566e-1475.51S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK1_TOBAC8.576e-1479.07S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK_CHLRE7.260e-1374.42S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK3_CATRO9.482e-1376.74S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_ACTCH9.482e-1376.74S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK2_TOBAC2.112e-1274.42S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617461 ID=DN617461; Name=DN617461; organism=Citrus sinensis; type=EST; length=551bp
GGCAAACCGCACACACATAGAGTGATATTAATAAGCAAAACAACTATTGG
CTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCTAC
ATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGGCA
CCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGACAT
GGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAA
GGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCTTA
GTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACCA
ATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAAAT
TTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGA
AGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAAC
CTGCCATTACCGCCCCTTTTGAGATCCNAATTGATGGTCATCATTCCTGG
C
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