DN617458

Overview
NameDN617458
Unique NameDN617458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617458_ssr287 microsatellite DN617458_ssr287:287..296. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5659 contig Csv1_Contig5659:491..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617458 vs. ExPASy Swiss-Prot
Match: CIPK1_ARATH (CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  379 EIISKIEEAASPLGFDVKKNNFKLKLQGEKTGRKGH--LSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGDETIV 645
            +++ KIE A + +GF V+K + KL+++ E+  +KG   LSV  E+FE+ PSL +VELRKS GD+  + + Y+ L   LKDV   S ++ IV
Sbjct:  356 DLLEKIETAVTEMGFSVQKKHAKLRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERL---LKDVGTSSPEQEIV 443          
BLAST of DN617458 vs. ExPASy Swiss-Prot
Match: CIPKD_ARATH (CBL-interacting serine/threonine-protein kinase 13 OS=Arabidopsis thaliana GN=CIPK13 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 36/90 (40.00%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  388 PVNEIISKIEEAASPLGFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKF-YKNLSTGLKDVVWKSGDE 654
            P+ +IISK+EE A  + F V+K ++ ++L+G + G KG L++  EIFE+ PSL +VE++K GG+  E+ +F  K L   L+ ++    DE
Sbjct:  400 PMTKIISKLEEIAKEVKFMVRKKDWSVRLEGCREGAKGPLTIRVEIFELTPSLVVVEVKKKGGNIEEYEEFCNKELRPQLEKLMHYQADE 489          
BLAST of DN617458 vs. ExPASy Swiss-Prot
Match: CIPKQ_ORYSJ (CBL-interacting protein kinase 26 OS=Oryza sativa subsp. japonica GN=CIPK26 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  403 KRPVNEIISKIEEAASPLGFDVKKN-NFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYK-NLSTGLKDVVW 660
            ++P   I +K+ E A      +KK  N  L+L   K G KG L +  E+FE+APS ++VE +KS GDT+E+ K  K ++   LKD+VW
Sbjct:  373 RQPAAAIFAKLNELARRFKLKIKKKENGVLRLVAPKEGIKGLLELDAEVFELAPSFHLVEFKKSNGDTIEYQKLMKEDIRPALKDIVW 460          
BLAST of DN617458 vs. ExPASy Swiss-Prot
Match: CIPK2_ARATH (CBL-interacting serine/threonine-protein kinase 2 OS=Arabidopsis thaliana GN=CIPK2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  403 KRPVNEIISKIEEAASPLGFDVKKNNFKL-KLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFY-KNLSTGLKDVVW 660
            ++P +EIISK+ E A  L   ++K    L KL+  K G+ G L++  EIF+V P+ ++VE++K  GDT+E+ K   ++L   L D+VW
Sbjct:  346 QKPASEIISKLVEVAKCLKLKIRKQGAGLFKLERVKEGKNGILTMDAEIFQVTPTFHLVEVKKCNGDTMEYQKLVEEDLRPALADIVW 433          
The following BLAST results are available for this feature:
BLAST of DN617458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CIPK1_ARATH1.162e-1142.86CBL-interacting serine/threonine-protein kinase 1 ... [more]
CIPKD_ARATH1.518e-1140.00CBL-interacting serine/threonine-protein kinase 13... [more]
CIPKQ_ORYSJ4.415e-1140.91CBL-interacting protein kinase 26 OS=Oryza sativa ... [more]
CIPK2_ARATH7.531e-1139.77CBL-interacting serine/threonine-protein kinase 2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617458 ID=DN617458; Name=DN617458; organism=Citrus sinensis; type=EST; length=662bp
CCCTTTTTTTTTTTTACAATATATTTATTCTTTATTTGAATTTTCGTGGT
CCATAGACAAGTCACTAAAAACAAACAAAATGAAAATGACAGTGGACTGA
GAGTCTTTTTGATTATTTGCAGGTAATTGACTACGTTCAATATCCGTTGA
GATGATACAACTGGAAGTCTGAAACCACACAAAAGCCAAACCAAGGTACA
CGAGAAGTGAGTTCTGAATCACAAATGAAGGAAACACATGGCCTAGAGGA
TAAAATACAAAGCTGAGATACAATGGTGCAAAAGCAATATATATATTTGC
TGGAGATATTCAGCAGTGCAAGTCATGAAAGGAAATCCGCTATTGAGACC
CTGCGCCACCAGCGACTGCAGATCCTTCAACAATTGTTTCATCTCCTGAT
TTCCAAACAACATCTTTCAGCCCAGTCGAAAGGTTTTTGTAAAACTTGTG
AAATTCTAAGGTATCTCCTCCAGATTTTCGAAGCTCAACCATGTAAAGTG
AAGGGGCCACCTCAAAAATCTCTGTTGCAACAGATAAATGACCCTTGCGT
CCAGTTTTTTCCCCTTGAAGCTTCAACTTGAAATTATTTTTCTTCACATC
AAAACCCAAAGGCGATGCAGCTTCCTCAATTTTCGATATAATTTCGTTAA
CAGGACGTTTGG
back to top