DN617456

Overview
NameDN617456
Unique NameDN617456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.504e-25
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = -3
Query:  159 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWD-GNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAG-SSWLGSTGFPFSLGL 557
            AQGR +P Q   IV+Q   I   +D   +     TYLGRPWKEYSRT+IMQS I   I P GW  W+  NF  +T +Y E+QN G GA    R+ WKGF+   +   AQ FT G +I    +WL     P+  G+
Sbjct:  237 AQGRTEPIQKGAIVLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  180 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEW-DGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTG 557
            AQG+ DPNQ++G+ IQ+  I A  ++       PTYLGRPWKE+S TVIM++ I  V+ P+GW  W  G     ++ YGE++N G G+  + RVKW G++ + S  EA  FT  + + G+ W+ +TG
Sbjct:  459 AQGKKDPNQSSGMSIQRCTISANGNVIA-----PTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATG 580          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -3
Query:  192 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNF--ALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAG-SSWL 557
            A+G  + NQNTGI I +  I    ++        TYLGRPWK +S+TVIMQS I   ++PAGW  W+  +     T+FY E++N+G G+  S RVKW G++ I+S  EA  FT   F+ G  +W+
Sbjct:  839 AEGTQEANQNTGISIHQCTISPNGNVTAT-----TYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWI 958          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.698e-21
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  255 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEW--DGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVI 557
            A GR D  QNTG  +   RI   SDL PV+  + +YLGRPW++YSR ++M+S I D I   GW  W   G+  L TL++GE +N G  A  S RV W+GF  I
Sbjct:  377 ANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSI 479          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = -3
Query:  159 GIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 524
            GIV+Q  RI     L P + +  TYLGRPWK++S TVIM + + D+I P GW  WDG     +  Y E+ N G GA  + RV W   +V  SA E   FT  +++   +W+     P ++GL
Sbjct:  469 GIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.083e-19
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  183 AQGRADPNQNTGIVIQKSRIGATSD-LKPVQGS---FPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 557
            A GR D +Q+TG V     I  T + +K  Q +      +LGRPWKE+SRTV +  ++  +I P GW  W+G+FAL TL+YGE++N G G+  S RV W              ++  +FI    W  +T
Sbjct:  476 AHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSS---EIPEKHVDVYSVANFIQADEWASTT 601          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  162 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFI------AGSSWLGSTGFPFSLG 557
            A GR   N  + +V Q S       L  V     +YLGRPWK+YS+ VIM S+I  +  P G+  W G+    T  Y E+ N G GA T+ RVKW G +V+TS   A+ + PG F       A  +W+  +G P+SLG
Sbjct:  310 AGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAE-YYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = -3
Query:  195 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFP----TYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSW 557
            AQGR DP+Q+TG V     I  T +   +  + P     +LGRPWK+YSRTV +  ++  +I P GW  W G+FAL TL+YGE +N G G+  S RV W              ++  +FI    W
Sbjct:  425 AQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSS---QIPDEHVHVYSVANFIQADEW 546          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = -3
Query:  159 GIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 524
            GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I D+I P GW+EW G     T  Y E  N G GA T+ RV W   ++  SA E + FT  +++  ++W+     P  LGL
Sbjct:  465 GIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = -3
Query:  159 GIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 524
            GIV+Q  RI     L   +    +YLGRPWK++S TVI+ S I DVI P GW  WDG     +  Y E+ N G GA T+ RV W   ++  SA E   FT  +++   +W+     P +LGL
Sbjct:  476 GIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
The following BLAST results are available for this feature:
BLAST of DN617456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PME_PETIN6.504e-2543.70Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME1_ARATH1.892e-2442.52Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME26_ARATH4.363e-2142.40Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME54_ARATH5.698e-2146.60Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME4_ARATH3.126e-1939.34Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME64_ARATH4.083e-1937.21Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_MEDSA6.965e-1939.13Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME51_ARATH6.965e-1938.40Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_BRANA2.026e-1836.89Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH2.026e-1840.16Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617456 ID=DN617456; Name=DN617456; organism=Citrus sinensis; type=EST; length=559bp
TCCCATGCTATTTTATTTCTCTGTTAATCACACAATAGTATTTGTGAAAT
CGAAGCCACGAATAAGACACGCTCAATCAAATATTACAAATTGAAAGACC
AGAGACCTATGGATCCACTAATACAAAACATATTAATTAAAACTCCTAGT
GAATATTACAAACCAAGGGAGAATGGGAAACCAGTGGAGCCCAGCCAGCT
ACTACCAGCAATGAAGCTTCCAGGAGTAAAAGCTTGAGCCTCGGTAGCAC
TTGTAATAACCCTAAATCCCTTCCATTTCACTCTCCCTGAAGTTCCGGCA
CCGGCTCCGGCGTTCTGATGCTCTCCGTAAAACAATGTGTTCAACGCGAA
GTTACCATCCCACTCGTGCCACCCGGCAGGGTGGATCACGTCAGTAATCG
ATGACTGCATGATCACCGTCCTCGAGTACTCCTTCCAGGGCCTGCCGAGG
TACGTCGGGAAACTACCCTGAACCGGTTTTAAATCGGAGGTGGCACCAAT
CCTAGATTTTTGAATGACAATGCCGGTGTTTTGGTTAGGGTCAGCCCTGC
CTTGGGCTG
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