DN617456

Overview
NameDN617456
Unique NameDN617456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.716e-17
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = -3
Query:  159 GIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 524
            GIV+   RI    +L+  + +  +YLGRPWK+++ TVI+ + I D+I P GW EW G     T  Y E  N G GA T+ R  W   +V  SA E + +T  +++  ++W+     P  LGL
Sbjct:  469 GIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = -3
Query:  159 GIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 524
            GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I D+I P GW+EW G     T  Y E  N G GA  + RV W   ++  SA E + FT  +++  ++W+        LGL
Sbjct:  452 GIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 43/119 (36.13%), Postives = 58/119 (48.74%), Query Frame = -3
Query:  192 NTGIVIQKSRIGATSDLK------PVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 530
            N G +  + R  AT           + GS  T+LGRPW  YSR V   S  ++V+ P GW++W  +   NT++YGE++  G GA    RV+W       S  EA  F    FI G  WL
Sbjct:  217 NNGSITAQMRTSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWS---KQLSDEEATVFLSKDFIGGKDWL 332          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = -3
Query:  192 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 557
            AQGR+   ++TG    K ++  T  L         YLGR W  +SR V   + + ++I P GW+ W       T+FYG+++  GAGA   GRV W   R +T   EA+ F   +FI GS W+
Sbjct:  272 AQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 44/122 (36.07%), Postives = 55/122 (45.08%), Query Frame = -3
Query:  192 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 557
            AQGR + N   G V              V G    YLGR W+ YSR +   S++TDV+ P GW EW+       L Y EH   G+G+ TS R KW       SA+  Q     SFI    W+
Sbjct:  214 AQGRTNANDANGFVFINCL---------VHGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKWV---KKLSASAVQHLADLSFINRGGWV 323          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -3
Query:  369 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGW 557
            AQ R +    +G   QK  I A+SDL P++G+  T+LGRPW+ +SR V M+S I DVI  AGW
Sbjct:  224 AQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 40/122 (32.79%), Postives = 60/122 (49.18%), Query Frame = -3
Query:  192 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 557
            A GR+  ++N+G       IG T  +         +LGR W+ YSR V + +++TDVI P GW+ ++      T+FYGE+  +G GA  S R     +    + T+       SFI G  WL
Sbjct:  279 ANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAP---YVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 42/128 (32.81%), Postives = 56/128 (43.75%), Query Frame = -3
Query:  174 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFP 557
            AQGR +P    G +              V G+   +LGRPW+ YSR +   S++TDV+ P GW  W+     N L + EH   G+GA    RVKW       S +  Q     SFI    W+     P
Sbjct:  219 AQGRTNPYDANGFIFINCL---------VYGTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKWV---KKLSESAIQNLADLSFINRGGWVEDLPIP 334          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  297 AQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLF--YGEHQNAGAGA 557
            A GR+     +  VI KS + A       +G++  YLGRPW EY+R V  Q+S+T+VI+  GW EW  +   NT +  +GE+ N GAG+
Sbjct:  212 ANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTS-TPNTEYVTFGEYANTGAGS 297          
BLAST of DN617456 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 35/94 (37.23%), Postives = 45/94 (47.87%), Query Frame = -3
Query:  192 VQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 473
            + G+   YLGR W  YSRTV     I D+I P GW +W        + +GE+   G GA   GRV W   + +T   E + F    FI G  WL
Sbjct:  288 ISGTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
The following BLAST results are available for this feature:
BLAST of DN617456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PME37_ARATH1.716e-1736.89Probable pectinesterase/pectinesterase inhibitor V... [more]
PME_BRACM8.514e-1735.25Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME11_ARATH8.811e-1436.13Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME53_ARATH1.963e-1336.07Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME55_ARATH1.662e-1236.07Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME56_ARATH1.837e-1149.21Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME8_ARATH2.399e-1132.79Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME29_ARATH3.134e-1132.81Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME_ASPAC6.981e-1140.45Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME62_ARATH9.118e-1137.23Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617456 ID=DN617456; Name=DN617456; organism=Citrus sinensis; type=EST; length=559bp
TCCCATGCTATTTTATTTCTCTGTTAATCACACAATAGTATTTGTGAAAT
CGAAGCCACGAATAAGACACGCTCAATCAAATATTACAAATTGAAAGACC
AGAGACCTATGGATCCACTAATACAAAACATATTAATTAAAACTCCTAGT
GAATATTACAAACCAAGGGAGAATGGGAAACCAGTGGAGCCCAGCCAGCT
ACTACCAGCAATGAAGCTTCCAGGAGTAAAAGCTTGAGCCTCGGTAGCAC
TTGTAATAACCCTAAATCCCTTCCATTTCACTCTCCCTGAAGTTCCGGCA
CCGGCTCCGGCGTTCTGATGCTCTCCGTAAAACAATGTGTTCAACGCGAA
GTTACCATCCCACTCGTGCCACCCGGCAGGGTGGATCACGTCAGTAATCG
ATGACTGCATGATCACCGTCCTCGAGTACTCCTTCCAGGGCCTGCCGAGG
TACGTCGGGAAACTACCCTGAACCGGTTTTAAATCGGAGGTGGCACCAAT
CCTAGATTTTTGAATGACAATGCCGGTGTTTTGGTTAGGGTCAGCCCTGC
CTTGGGCTG
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