DN617444

Overview
NameDN617444
Unique NameDN617444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:248..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.224e-70
Identity = 129/155 (83.23%), Postives = 139/155 (89.68%), Query Frame = -1
Query:  140 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 604
            EAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:   66 EAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.650e-70
Identity = 128/154 (83.12%), Postives = 140/154 (90.91%), Query Frame = -1
Query:  143 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 604
            EAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   66 EAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 4.650e-70
Identity = 128/154 (83.12%), Postives = 140/154 (90.91%), Query Frame = -1
Query:  143 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 604
            EAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   66 EAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.564e-52
Identity = 97/142 (68.31%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  179 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 604
            EA RI CNKY+ KY GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:   66 EAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.272e-51
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   66 EAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.272e-51
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   66 EAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 202.601 bits (514), Expect = 1.272e-51
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   66 EAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.272e-51
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:   66 EAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.170e-51
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   66 EAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.170e-51
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   66 EAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of DN617444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL103_ARATH1.224e-7083.2360S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ORYSJ4.650e-7083.1260S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI4.650e-7083.1260S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_DROME2.564e-5268.3160S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_SHEEP1.272e-5168.0960S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG1.272e-5168.0960S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN1.272e-5168.0960S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10L_MACFA1.272e-5167.3860S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_RAT2.170e-5168.0960S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN2.170e-5168.0960S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617444 ID=DN617444; Name=DN617444; organism=Citrus sinensis; type=EST; length=604bp
AAGGATCACATNAGTTAAACCAAATAAACATGTCACTTCAACTTGAGAAA
TCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACAG
TAGTCACAGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCTT
CCAGGAAAGCTCTTCCAGGTTGGCGTTGAGCCAAAGGACCATGACATCCG
AGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCCA
CCTCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATTTCCTGCTGA
CAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGGCGAAGGGCC
TCCTGAGCATGGTGGCTGTTACTGTCCTTGCAACGGACAGAAAGCAAGAC
CTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTCCAAAAGCAC
CCCTCATTCCAGTCTGGAGCCGATCAGCCCCAGCACACGAAAGCATCTTG
TTAATGCGCAGAACATGGAAGGGGTGCACCCTCACTCGCAAATGGAAAGC
ATCCTTGCCAGCGTACTTGGCCATGTACTTGTTGCAAGCGATACGGGCAG
CTTC
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