DN617444

Overview
NameDN617444
Unique NameDN617444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:248..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.719e-49
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = -1
Query:  173 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 604
            EAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   66 EAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.008e-48
Identity = 92/144 (63.89%), Postives = 113/144 (78.47%), Query Frame = -1
Query:  173 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 604
            EAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   66 EAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.933e-48
Identity = 92/141 (65.25%), Postives = 107/141 (75.89%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:   66 EAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.102e-46
Identity = 90/141 (63.83%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  182 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 604
            EAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:   66 EAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.410e-42
Identity = 87/149 (58.39%), Postives = 104/149 (69.80%), Query Frame = -1
Query:  158 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 604
            EAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:   66 EAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.554e-40
Identity = 83/129 (64.34%), Postives = 95/129 (73.64%), Query Frame = -1
Query:  218 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 604
            EAARI  NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:   66 EAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = -1
Query:  293 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 604
            EAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:   63 EAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = -1
Query:  299 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 604
            EAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:   65 EAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  302 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 604
            EAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:   63 EAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  302 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 604
            EAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:   68 EAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
The following BLAST results are available for this feature:
BLAST of DN617444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10B_SCHPO7.719e-4964.5860S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO1.008e-4863.8960S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_BOMMA2.933e-4865.2560S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST2.102e-4663.8360S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR1.410e-4258.3960S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU8.554e-4064.3460S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_METKA2.954e-2453.8550S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE4.265e-2353.9250S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF7.275e-2352.4850S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_HYPBU7.275e-2355.3450S ribosomal protein L10e OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617444 ID=DN617444; Name=DN617444; organism=Citrus sinensis; type=EST; length=604bp
AAGGATCACATNAGTTAAACCAAATAAACATGTCACTTCAACTTGAGAAA
TCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACAG
TAGTCACAGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCTT
CCAGGAAAGCTCTTCCAGGTTGGCGTTGAGCCAAAGGACCATGACATCCG
AGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCCA
CCTCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATTTCCTGCTGA
CAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGGCGAAGGGCC
TCCTGAGCATGGTGGCTGTTACTGTCCTTGCAACGGACAGAAAGCAAGAC
CTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTCCAAAAGCAC
CCCTCATTCCAGTCTGGAGCCGATCAGCCCCAGCACACGAAAGCATCTTG
TTAATGCGCAGAACATGGAAGGGGTGCACCCTCACTCGCAAATGGAAAGC
ATCCTTGCCAGCGTACTTGGCCATGTACTTGTTGCAAGCGATACGGGCAG
CTTC
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