DN617444

Overview
NameDN617444
Unique NameDN617444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:248..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  293 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 604
            E++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:   63 ESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  293 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 604
            EAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:   63 EAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  272 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 604
            EAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +     +F
Sbjct:   51 EAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = -1
Query:  293 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 604
            EAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     +   A++ALRRA  K P    I+V +
Sbjct:   63 EAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  320 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 604
            EAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:   63 EAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  299 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 604
            EAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q L +V  +  N   A++AL  A  K P   +I++
Sbjct:   64 EAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = -1
Query:  299 EAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 604
            EAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:   63 EAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  299 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 604
            EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:   63 EAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  320 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 604
            EA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:   63 EAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of DN617444 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  299 EAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 604
            EAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:   64 EAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
The following BLAST results are available for this feature:
BLAST of DN617444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METM57.791e-1742.3150S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METMJ1.736e-1645.1950S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_METST2.267e-1638.7450S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_METBU2.960e-1643.2750S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_THESM1.125e-1545.2650S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_METMA1.469e-1545.1050S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_METS51.919e-1543.2750S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METLZ1.919e-1544.1250S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_THEON3.273e-1545.2650S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_METAC3.273e-1544.1250S ribosomal protein L10e OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617444 ID=DN617444; Name=DN617444; organism=Citrus sinensis; type=EST; length=604bp
AAGGATCACATNAGTTAAACCAAATAAACATGTCACTTCAACTTGAGAAA
TCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACAG
TAGTCACAGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCTT
CCAGGAAAGCTCTTCCAGGTTGGCGTTGAGCCAAAGGACCATGACATCCG
AGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCCA
CCTCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATTTCCTGCTGA
CAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGGCGAAGGGCC
TCCTGAGCATGGTGGCTGTTACTGTCCTTGCAACGGACAGAAAGCAAGAC
CTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTCCAAAAGCAC
CCCTCATTCCAGTCTGGAGCCGATCAGCCCCAGCACACGAAAGCATCTTG
TTAATGCGCAGAACATGGAAGGGGTGCACCCTCACTCGCAAATGGAAAGC
ATCCTTGCCAGCGTACTTGGCCATGTACTTGTTGCAAGCGATACGGGCAG
CTTC
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