DN617443

Overview
NameDN617443
Unique NameDN617443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1473 contig Csv1_Contig1473:48..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34A_YEAST (60S ribosomal protein L34-A OS=Saccharomyces cerevisiae GN=RPL34A PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.764e-18
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + + +  +TV+RAYGG      V+ERIIRAF
Sbjct:    1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34B_YEAST (60S ribosomal protein L34-B OS=Saccharomyces cerevisiae GN=RPL34B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.916e-18
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + + +  +TV+RAYGG      V+ERI+RAF
Sbjct:    1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAF 93          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34_DANRE (60S ribosomal protein L34 OS=Danio rerio GN=rpl34 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            MVQRLTYR+R SY T SN+ R+ +TPG ++VY  TKK    PK  C +   R++GI  +RP      RL + ++ V+RAYGG +    VR+RI RAF
Sbjct:    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVRPQVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 95          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34_HUMAN (60S ribosomal protein L34 OS=Homo sapiens GN=RPL34 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            MVQRLTYR+R SY T SN+ R+ +TPG ++VY  TKK    PK  C V   R++G+  +RP      RL + ++ V+RAYGG +    VR+RI RAF
Sbjct:    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 95          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34_MOUSE (60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            MVQRLTYR+R SY T SN+ R+ +TPG ++VY  TKK    PK  C V   R++G+  +RP      RL + ++ V+RAYGG +    VR+RI RAF
Sbjct:    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL--MRLSKTQKHVSRAYGGSMCAKCVRDRIKRAF 95          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34_ICTPU (60S ribosomal protein L34 OS=Ictalurus punctatus GN=rpl34 PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   31 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            MVQRLTYR+  SY T SN+ R+ +TPG ++VY  TKK    PK  C +   R++GI  +RP      RL + ++ V+RAYGG +    VR+RI RAF
Sbjct:    1 MVQRLTYRRTVSYNTTSNKTRLSRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVRPQVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAF 95          
BLAST of DN617443 vs. ExPASy Swiss-Prot
Match: RL34_ENCCU (60S ribosomal protein L34 OS=Encephalitozoon cuniculi GN=RPL34 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   34 VQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 315
            ++ +   K  +Y T+SN+ R V+TP GKLV +  KK +   +C      +  I  +RPAE+ R ++  + R VNR YG    G  VRE+II AF
Sbjct:    1 MKNVLIHKGATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKV--SARRVNRPYGATTCGRCVREKIISAF 92          
The following BLAST results are available for this feature:
BLAST of DN617443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL34A_YEAST3.764e-1850.5360S ribosomal protein L34-A OS=Saccharomyces cerev... [more]
RL34B_YEAST4.916e-1849.4760S ribosomal protein L34-B OS=Saccharomyces cerev... [more]
RL34_DANRE1.339e-1547.4260S ribosomal protein L34 OS=Danio rerio GN=rpl34 ... [more]
RL34_HUMAN2.283e-1547.4260S ribosomal protein L34 OS=Homo sapiens GN=RPL34... [more]
RL34_MOUSE2.982e-1547.4260S ribosomal protein L34 OS=Mus musculus GN=Rpl34... [more]
RL34_ICTPU6.644e-1546.3960S ribosomal protein L34 OS=Ictalurus punctatus G... [more]
RL34_ENCCU3.412e-1138.3060S ribosomal protein L34 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617443 ID=DN617443; Name=DN617443; organism=Citrus sinensis; type=EST; length=581bp
CTTTCAAAACCCTAAGAGTGAGAGAGAAAAATGGTTCAACGGCTTACGTA
CCGGAAGCGGCACAGCTATGCCACCAAATCGAACCAGCACCGCGTCGTCA
AAACCCCTGGAGGGAAGTTGGTGTACCAGAGCACGAAGAAAAGAGCTAGT
GGACCTAAGTGTCCTGTGACTGGCAAGAGAATTCAAGGGATTCCTCATTT
GAGACCCGCTGAATATAAGAGGTCCAGATTGCCCAGAAACAGGAGGACTG
TGAACCGTGCTTATGGTGGAGTATTGTCTGGAGCTGCTGTCAGGGAAAGA
ATCATCCGTGCCTTTTTGGTGGAAGAGCAGAAGATTGTGAAGAAGGTCTT
GAAGATTCAGAAGGCAAAAGAGAAGCAAGCTGCTAAGAGTTAAGACTGGA
ATATTTAATGAGTTTCGAACTACCTTTTAGTATATCTGTTGTTTTGGATG
ATGATATTGACTCATGGAGAAGTAATCTAGGTTTTTCTTTATTTGAAATT
GTAATCCCGCACTTGCTTATATGAACTCAATTCTTAAAGCACTCAGTTGA
TAACCATTGTGGTGCAAAAAAAAAAAAAAAA
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