DN617442

Overview
NameDN617442
Unique NameDN617442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1473 contig Csv1_Contig1473:99..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34A_YEAST (60S ribosomal protein L34-A OS=Saccharomyces cerevisiae GN=RPL34A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.633e-14
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  267 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 515
            Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + + +  +TV+RAYGG      V+ERIIRAF
Sbjct:   13 YNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34B_YEAST (60S ribosomal protein L34-B OS=Saccharomyces cerevisiae GN=RPL34B PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  267 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 515
            Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + + +  +TV+RAYGG      V+ERI+RAF
Sbjct:   13 YNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_ENCCU (60S ribosomal protein L34 OS=Encephalitozoon cuniculi GN=RPL34 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -1
Query:  267 GHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 524
            G +Y T+SN+ R V+TP GKLV +  KK +   +C      +  I  +RPAE+ R ++  + R VNR YG    G  VRE+II AF
Sbjct:    9 GATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKV--SARRVNRPYGATTCGRCVREKIISAF 92          
The following BLAST results are available for this feature:
BLAST of DN617442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL34A_YEAST4.633e-1450.6060S ribosomal protein L34-A OS=Saccharomyces cerev... [more]
RL34B_YEAST6.051e-1449.4060S ribosomal protein L34-B OS=Saccharomyces cerev... [more]
RL34_ENCCU1.648e-1141.8660S ribosomal protein L34 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617442 ID=DN617442; Name=DN617442; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTTTGCCCACAATGGTTATCAACTGAGTGCTTTAAGA
ATTTAGTTCATATAAGCAAGTGCGGGATTACAATTTCAAATAAAGAAAAA
CCTAGATTACTTCTCCATGAGTCAATATCATCATCCAAAACAACAGATAT
ACTAAAAGGTAGTTCGAAACTCATTAAATATTCCAGTCTTAACTCTTAGC
AGCTTGCTTCTCTTTTGCCTTCTGAATCTTCAAGACCTTCTTCACAATCT
TCTGCTCTTCCACCAAAAAGGCACGGATGATTCTTTCCCTGACAGCAGCT
CCAGACAATACTCCACCATAAGCACGGTTCACAGTCCTCCTGTTTCTGGG
CAATCTGGACCTCTTATATTCAGCGGGTCTCAAATGAGGAATCCCTTGAA
TTCTCTTGCCAGTCACAGGACACTTAGGTCCACTAGCTCTTTTCTTCGTG
CTCTGGTACACCAACTTCCCTCCAGGGGTTTTGACGACGCGGTGCTGGTT
CGATTTGGTGGCATAGCTGTGCCCGCTTCC
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