DN617441

Overview
NameDN617441
Unique NameDN617441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617441_ssr37 microsatellite DN617441_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617441_ssr287 microsatellite DN617441_ssr287:287..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10123 contig Csv1_Contig10123:232..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.911e-35
Identity = 79/179 (44.13%), Postives = 116/179 (64.80%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLYSASIA 608
            ++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+  ++GQQPITF R+V+ALC +P++L+       F  D+ +RA +IL    G + G+YS SQG+  +R+ +AA I  RDG PADP++I+LT GAS  +  +++LL+        G++ PIPQYPLYSA I+
Sbjct:   50 LESMNPQVKAVEYAVRGPIVLKAGEIEMELQRGI-KKPFTEVIRANIGDAHAMGQQPITFLRQVMALCTYPNLLNSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVIS 223          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.377e-35
Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            VD++N  V K +YAVRG IV  A ++++EL+       FDE++  NIG+  ++GQ+PITFFR+V+ALC +P +LD ++    F  D+  RA +IL    G + GAY+ SQGI  +R  +A  IE RD G P+DP++I+LT GAS  +  +++LL   E     G++  IPQYPLYSASIA
Sbjct:   76 VDTMNANVKKVDYAVRGPIVQRAVQIEKELKEGV-KKPFDEVIKANIGDAHAMGQRPITFFRQVMALCTYPQLLDDNK----FPEDAKNRARRILQSCGGNSIGAYTTSQGIDCVRQDVAKYIERRDGGIPSDPDNIYLTTGASDGIVTILKLLTAGEGLTRTGVMISIPQYPLYSASIA 250          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34
Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLYSASIA 608
            ++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+ Q++GQQPITF R+V+ALC +P++LD       F  D+ +RA +IL    G + G+YS SQG+  +R+ +AA I  RD G PADP++I+LT GAS  +  ++++L+        G++ PIPQYPLYSA I+
Sbjct:   50 LESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS 224          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.024e-32
Identity = 78/180 (43.33%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            ++S+NP + K EYAVRG IV  A  L++ELQ       F E++  NIG+  ++GQ+PITF R+V A+C +P +++ ++    F  D  ++A +IL    G + GAYS SQGI+ +R  +A  IE RD G  +DPN+I+L+ GAS ++  M++LL+  +     G+L PIPQYPLYSA++A
Sbjct:   51 LESMNPCIQKVEYAVRGPIVIRAVELEKELQQGV-KKPFTEVIKANIGDAHAMGQKPITFLRQVSAICLYPELMNDNK----FPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGIQSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVLIPIPQYPLYSAALA 225          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.337e-32
Identity = 77/180 (42.78%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            +DS+NP + K EYAVRG IV  A  L++ELQ       F E++  NIG+  ++GQ+P+TF R+V A+C +P +++ ++    F  D  ++A +IL    G + GAYS SQGI+ +R  +A  IE RD G  +DPN+I+L+ GAS ++  M++LL+  +     G++ PIPQYPLYSA++A
Sbjct:   67 LDSMNPCIQKVEYAVRGPIVIRAVELEKELQQGV-KKPFTEVIKANIGDAHAMGQKPVTFLRQVSAICLYPELMNDNK----FPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGILSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVMIPIPQYPLYSAALA 241          
The following BLAST results are available for this feature:
BLAST of DN617441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALAT2_MOUSE4.911e-3544.13Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT2_DANRE8.377e-3545.56Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT2_HUMAN2.437e-3444.44Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_XENTR1.024e-3243.33Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT2_XENLA1.337e-3242.78Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617441 ID=DN617441; Name=DN617441; organism=Citrus sinensis; type=EST; length=609bp
CTCGTTTCTTGTCATCCACTTCTGTGATTGATTCCCCTTCTTCTTCTTCA
ATGGCTCCCACCTCTTCTCCTGCTATCACGGTCGATTCCCTTAACCCCAA
GGTTCTAAAATGCGAGTATGCTGTTCGTGGTGAGATTGTCTCCATTGCCC
AGCGGTTGCAACAAGAGTTACAAACTAACCCTGGCTCTCATTCCTTTGAT
GAGATACTGTACTGCAACATTGGAAATCCTCAGTCTCTTGGTCAGCAGCC
AATAACCTTTTTCCGAGAGGTTCTTGCATTATGTGACCATCCATCCATTT
TGGACAGAAGTGAAACACAAGGTTTGTTCAGTGCGGATTCTATAGAGCGA
GCTTGGCAGATACTGGATCAAATTCCTGGGCGAGCAACTGGGGCTTACAG
TCATAGTCAGGGTATCAAGGGACTGCGTGATACAATCGCTGCTGGAATTG
AGGCTCGTGATGGTTTTCCTGCTGATCCAAATGATATTTTCTTGACAGAT
GGTGCAAGTCCTGCTGTCCACATGATGATGCAGTTATTGATAAGATCAGA
GAACGATGGAATTCTCTGTCCTATTCCTCAGTACCCTTTATACTCTGCTT
CAATTGCTC
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