DN617440

Overview
NameDN617440
Unique NameDN617440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.326e-35
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++Q+ K+ SV LC    GQ+L  + +SPP   D S+  + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:  337 KQQMQKLRSVRLCPPTPGQVLLDVAVSPPAPSDPSFPRFQAERRAVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 70/159 (44.03%), Postives = 96/159 (60.38%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++Q+ K+ SV LC  + GQ L  +V+SPP   + S++ + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FP+IQLP             PD F+C  LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L  FH  F  ++
Sbjct:  337 QKQMAKLMSVRLCPPVPGQALMGMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRVLLEKLRHFHAKFTHEY 495          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.272e-34
Identity = 69/159 (43.40%), Postives = 97/159 (61.01%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++Q+ K+ SV LC  + GQ L  +V+SPP   + S++ + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FP++QLP             PD F+C  LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:  337 QKQMGKLMSVRLCPPVPGQALMDMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 495          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.057e-33
Identity = 71/161 (44.10%), Postives = 95/161 (59.01%), Query Frame = -2
Query:  177 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 659
            R+ ++K+ S+++CS ++GQ +  L++ PP+ GDESYE    ER  I   +  RA  L + F  LEGI C K +GAMYLFPR+ LP             PD FYC  LL +TGI  VPGSGFGQ PGT+H R T L    K    +    +FH++F  K+RN
Sbjct:  350 RDALFKLMSISICSVVTGQAVVDLMVKPPQPGDESYEQDHDERLKIFHEMRTRANLLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGICTVPGSGFGQRPGTYHVRTTFLAPGTK---WIQDWKEFHQDFFSKYRN 507          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.236e-23
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++QI K+A++++C  ++GQ+L  ++++PPK GD SY+ +  E D I  +L  + + L +    ++ ++C +  GAMYL P + LP          K  PD FY   LL  +GI +VPGSGFGQ  G +H R T L    K    + R    H   MD +
Sbjct:  349 KDQILKLATIDICPPVAGQLLVDMLVNPPKPGDPSYDLFIKEVDEIHEALRLQCRQLYEGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEGDYHIRITFLA---KGTEYIERFVKAHNEIMDLY 504          
The following BLAST results are available for this feature:
BLAST of DN617440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALAT1_BOVIN3.326e-3544.65Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAT1_MOUSE4.803e-3444.03Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAT1_RAT6.272e-3443.40Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT_YEAST9.057e-3344.10Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAT_SCHPO2.236e-2335.22Putative alanine aminotransferase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617440 ID=DN617440; Name=DN617440; organism=Citrus sinensis; type=EST; length=660bp
TACCAAAAAACCTTTGTAATATTTCATCGTAACAAAGACCTATGACCGTC
AAAAAAACAAAGAGGAAAAAAAGTACGCTTTGTCCATTCACTCTGTAAAC
GTTTAACAATTGAAATGAATGGCTACACATTATTTTTCTGAACTCAGTCT
CATATTATTATGCAGAAGATCTTTCAATTACGGAATTTGTCCATGAAATT
TTTATGGAAGTCTGTCAGCCGGGTCACAATCGCTGGAATCTTGTCCTCTT
GAGGCAATATGGTGCACCTAAAATGCCAAGTGCCGGGGACCTGCCCAAAA
CCAGAACCAGGAACAAGAACAATTCCAGTGGCATTGAGAAGGCGGCGACA
ATAAAATGCATCTGGAACAGTTTTTTCAGCTTCAGCAGCTTTAATTGCCT
TTTCAGGCAGTTGAATACGAGGAAAGAGATACATTGCTCCTTCAGCCTTG
TTACATGTTATTCCTTCCAAACTGTTAAATGCATCTTCCAATGTCTTTGC
ACGCCTGGCTAAAGATGAGAGGATTCCATCCCTCTCAGCGCAATAGGACT
CATAAGATTCATCTCCAACCTTAGGTGGACTCATGACAAGGCTTGCCAGA
ATTTGGCCGGAGATATTAGAACAAAGATTCACAGATGCCACTTTGTATAT
TTGCTCCCTT
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