DN617438

Overview
NameDN617438
Unique NameDN617438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1249 contig Csv1_Contig1249:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 37/142 (26.06%), Postives = 74/142 (52.11%), Query Frame = 3 
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+  +  LR +Y  +P   K+NL+A Y VHP    ++    F          +  K+  +  +++L+  + + ++EIP ++ ++D
Sbjct:  390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFM---APAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 526
[Close]
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 37/142 (26.06%), Postives = 74/142 (52.11%), Query Frame = 3 
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+  +  LR +Y  +P   K+NL+A Y VHP    ++    F          +  K+  +  +++L+  + + ++EIP ++ ++D
Sbjct:  388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFM---APAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 524
The following BLAST results are available for this feature:
BLAST of DN617438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GDAP2_DROPS3.937e-1126.06Protein GDAP2 homolog OS=Drosophila pseudoobscura ... [more]
GDAP2_DROME3.937e-1126.06Protein GDAP2 homolog OS=Drosophila melanogaster G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617438 ID=DN617438; Name=DN617438; organism=Citrus sinensis; type=EST; length=624bp
AATCAATCAAAAAAAGGAACTGCGACTCATTTAATTAATTGATAGATATA
ACAAATAACTCAAGCATCATGTGTTCCCAAGTTGTATCAGAATCCGAACA
AGAAGAGCTCATCGACAGGCTTGAAATTTTCAAGATTCATGGACGTGACA
AACAAGGCCGCAAGATTCTTCGTATCATAGGAAAATTCTTTCCCGCGCGG
CTTCTGAGCGTTGAAGTGCTGAAAAGGTATTTGGCGGAGAGGGTGTATCC
AAGATTGGGGAAGAAGGCGTTCACGGTGTTGTACGTTCACACAGGAGTGC
AGAGAAGCGAGAACTTTGCTGGAATCTCGGCCCTTCGATCAATCTATGAT
GCTATTCCCGCCAATGTCAAGGAAAATCTCCAGGCCGTTTATTTTGTTCA
TCCTGGCTTGCAGGCTCGTCTCTTTCTTGCCACCTTTGGCCGCCTTTTCT
TCAACGGAGTCGGAGGGTTGTACGGGAAGCTGAGGTATGTGAACAGGCTT
GATTACTTGTGGGAGCACGTGAGGAGGCACGAGGTCGAGATTCCAGAATT
TGTGATGGATCACGATGAGGATTTGGAGTACCGTCCGATGATGGATTATG
GTTTGGAGAGTGATCACCGCAGAG
back to top