DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 2.829e-56 Identity = 111/210 (52.86%), Postives = 151/210 (71.90%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRL-YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISLL YL+E + I GP++V+ P STL NW +E ++ P LR + F G+P ER+ ++ + AG+FDV +T+FE IKE++ L + W ++IIDE HR+KN S LS T+ Y+ +YRL++TGTPLQNNL ELW+LLNF+LP+IF+S ++FDEWF +G D+ E V+++LHKVLRPFLLRRLK DVEK LP Sbjct: 796 LGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK-AKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELP 1004
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.956e-50 Identity = 101/210 (48.10%), Postives = 143/210 (68.10%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTM-RLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+Q+ISL+ YL+E + GP +V+ P ST+ NW E ++ P L + + G P +R ++ + V G FDV +T++E IK+KS L + W ++IIDE HR+KN S LS T+ Y T RL++TGTPLQNNL ELW+LLNF+LP+IF+SA+TF++WF +G ++ E ++++LHKVLRPFLLRRLK +VEK LP Sbjct: 499 LGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRV-GNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLP 707
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 1.964e-49 Identity = 98/208 (47.12%), Postives = 143/208 (68.75%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRL-YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI-------SGEXDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISL+ YL + + + GP++++ P STL NW+ E ++ P + V + G+P+ RR + +N + A KF+V +T++E IK+K+ L + W+Y+IIDE HR+KN + L++ + Y YRLL+TGTPLQN L ELW+LLNFLLP IF S TF++WF E +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 802 LGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLP 1008
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 6.316e-48 Identity = 94/204 (46.08%), Postives = 137/204 (67.16%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF------QISGEXDQQE-VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISLL +L +G GPH+++ P S + NW E++R+CP + + + G +ER+ R+ F VC+TS+++ +++ A RR +WRY+I+DEA IKN S +++ +N+ RLL+TGTPLQN+L ELWSL++FL+P +F S F EWF I G + E +V++LHKVLRPFLLRR+K DVEK +P Sbjct: 647 LGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMP 850
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 8.249e-48 Identity = 95/210 (45.24%), Postives = 139/210 (66.19%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLY-NTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS------------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+ + YL E + GP +++ P STL NW+ E ++ P ++ + + G P+ R+ ++ + + F+V +T+FE IK++ L R W ++IIDE HRIKN S L+ T+ Y ++ YRL++TGTPLQNNL ELW+LLNF+LP+IF+S ++FDEWF E + ++++LHKVLRPFL RRLK DVEK LP Sbjct: 898 LGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIR-SSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELP 1106
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.135e-47 Identity = 100/210 (47.62%), Postives = 138/210 (65.71%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLY-NTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISL+ +L E + GP +V+ P STL NW E R+ P + + + G P+ R+ + + + F V +T++E IK++ L R W Y+IIDE HR+KN S L+ T+ Y ++ YRL++TGTPLQNNL ELW+LLNF+LP IF+S ++FDEWF +G D+ E V+++LHKVLRPFLLRRLK DVE LP Sbjct: 446 LGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSN-FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELP 654
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + I GP +++ P STL NW E ++ P + V + G+P RR L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y RLL+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + I GP +++ P STL NW E ++ P + V + G+P RR L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y RLL+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + I GP +++ P STL NW E ++ P + V + G+P RR L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y RLL+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + I GP +++ P STL NW E ++ P + V + G+P RR L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y RLL+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 775 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 981 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |