DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.829e-56
Identity = 111/210 (52.86%), Postives = 151/210 (71.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRL-YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL+E + I GP++V+ P STL NW +E  ++ P LR + F G+P ER+  ++  + AG+FDV +T+FE  IKE++ L +  W ++IIDE HR+KN  S LS T+   Y+ +YRL++TGTPLQNNL ELW+LLNF+LP+IF+S ++FDEWF      +G  D+ E        V+++LHKVLRPFLLRRLK DVEK LP
Sbjct:  796 LGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK-AKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELP 1004          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.956e-50
Identity = 101/210 (48.10%), Postives = 143/210 (68.10%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTM-RLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+Q+ISL+ YL+E +   GP +V+ P ST+ NW  E  ++ P L  + + G P +R  ++  + V G FDV +T++E  IK+KS L +  W ++IIDE HR+KN  S LS T+   Y T  RL++TGTPLQNNL ELW+LLNF+LP+IF+SA+TF++WF      +G  ++ E        ++++LHKVLRPFLLRRLK +VEK LP
Sbjct:  499 LGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRV-GNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLP 707          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.964e-49
Identity = 98/208 (47.12%), Postives = 143/208 (68.75%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRL-YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI-------SGEXDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISL+ YL + + + GP++++ P STL NW+ E  ++ P +  V + G+P+ RR + +N + A KF+V +T++E  IK+K+ L +  W+Y+IIDE HR+KN +  L++ +   Y   YRLL+TGTPLQN L ELW+LLNFLLP IF S  TF++WF           E +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  802 LGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLP 1008          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.316e-48
Identity = 94/204 (46.08%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF------QISGEXDQQE-VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL +L   +G  GPH+++ P S + NW  E++R+CP  + + + G  +ER+  R+       F VC+TS+++ +++  A RR +WRY+I+DEA  IKN  S   +++  +N+  RLL+TGTPLQN+L ELWSL++FL+P +F S   F EWF       I G  +  E +V++LHKVLRPFLLRR+K DVEK +P
Sbjct:  647 LGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMP 850          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 8.249e-48
Identity = 95/210 (45.24%), Postives = 139/210 (66.19%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLY-NTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS------------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+ + YL E +   GP +++ P STL NW+ E  ++ P ++ + + G P+ R+ ++  +  +  F+V +T+FE  IK++  L R  W ++IIDE HRIKN  S L+ T+  Y ++ YRL++TGTPLQNNL ELW+LLNF+LP+IF+S ++FDEWF                E +   ++++LHKVLRPFL RRLK DVEK LP
Sbjct:  898 LGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIR-SSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELP 1106          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.135e-47
Identity = 100/210 (47.62%), Postives = 138/210 (65.71%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLY-NTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI----SGEXDQQE--------VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISL+ +L E +   GP +V+ P STL NW  E  R+ P +  + + G P+ R+ +   +  +  F V +T++E  IK++  L R  W Y+IIDE HR+KN  S L+ T+  Y ++ YRL++TGTPLQNNL ELW+LLNF+LP IF+S ++FDEWF      +G  D+ E        V+++LHKVLRPFLLRRLK DVE  LP
Sbjct:  446 LGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSN-FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELP 654          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + I GP +++ P STL NW  E  ++ P +  V + G+P  RR     L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    RLL+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + I GP +++ P STL NW  E  ++ P +  V + G+P  RR     L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    RLL+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + I GP +++ P STL NW  E  ++ P +  V + G+P  RR     L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    RLL+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 989          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 100/211 (47.39%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + I GP +++ P STL NW  E  ++ P +  V + G+P  RR     L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    RLL+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  775 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 981          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SNF2_YEAST2.829e-5652.86Transcription regulatory protein SNF2 OS=Saccharom... [more]
STH1_YEAST3.956e-5048.10Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]
BRM_DROME1.964e-4947.12ATP-dependent helicase brm OS=Drosophila melanogas... [more]
SRCAP_HUMAN6.316e-4846.08Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
SNF22_SCHPO8.249e-4845.24SWI/SNF chromatin-remodeling complex subunit snf22... [more]
SNF21_SCHPO3.135e-4747.62Chromatin structure-remodeling complex subunit snf... [more]
SMCA4_RAT5.347e-4747.39Transcription activator BRG1 OS=Rattus norvegicus ... [more]
SMCA4_MOUSE5.347e-4747.39Transcription activator BRG1 OS=Mus musculus GN=Sm... [more]
SMCA4_HUMAN5.347e-4747.39Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]
SMCA4_BOVIN5.347e-4747.39Transcription activator BRG1 OS=Bos taurus GN=SMAR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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