DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 1.082e-31
Identity = 77/221 (34.84%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRG-----------ITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--QISGEXDQQE----------VVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTI ++   H  R               P ++V P +  G+W  E+  + P L+   ++G P ER  IR  +    K DV VTS+++   +   L +  W Y ++DE H IKN  + L+K ++   + +RL+++GTP+QNN+ ELWSL +FL+P    + +TF E F   I+   D +            ++ +HK + PF+LRRLK DV   LPP
Sbjct: 1387 LGKTLQTICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMK---KSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPP 1604          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: MIT1_SCHPO (Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe GN=mit1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.028e-29
Identity = 73/203 (35.96%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAI------KEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+Q IS +  L  +R    P +V+ P +T+ NW  E++++ P L+    +G+ + R  +R+  L+  K    V++  + I      +E S LR+F W+ +I+DE  R+KN+ S L   +    ++++LL+TGTPLQNN+ EL++LL FL P   ++AE    +  I       E V +LH++L+PF LRR+KS+V    P
Sbjct:  585 LGKTVQVISFISVLF-YRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQFLNPMKINAAELEKRYSII-----DTEKVTELHQILKPFFLRRVKSEVLDNFP 781          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.911e-28
Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-AGKFDVCVTSFEMAIKEKSA---LRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFS-SAETFDEWFQI--SGEXD------QQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT QTI+    L + + I GPH+V+AP ST+ NW+ E  +FCP L+   + G+  ER  IRE +      ++V +T++ +A   K+    LR   +   + DE H +KN  S   + +     ++R+L+TGTPLQNNL EL SLL F+LP +F    ++ D  F +  S E D       ++ V +   ++ PF+LRR KS V   LP
Sbjct:  416 LGKTCQTIAFFSLLMD-KNINGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIRERINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDALP 624          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: EP400_HUMAN (E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.048e-26
Identity = 67/199 (33.67%), Postives = 106/199 (53.27%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQ---QEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q I+   +L    G  GPH+VV     +  W  E++R+CP L+ + ++G+  E +  R+       F VC+TS+    +  +A  R  W+ ++IDE  R+K       + +    +  RLL+  +PL N   ELW++++FL+P I  S        +   E  Q    +VV +LH+V +PF+LRR K DVEK L
Sbjct: 1120 LGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPNSFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMVHFLVPGI--SRPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPFILRRTKRDVEKQL 1316          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 72/223 (32.29%), Postives = 115/223 (51.57%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRG-----------ITGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQE----VVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQ+I +L   H  R            +  P +VV P +  G+W++E+ +FC    L  + + G P ER  ++  +    + ++ V S+++   +    R   + Y I+DE H IKN  + LSK ++    NYR++++GTP+QNN+ ELWSL +FL+P    +   F   +               +QE     +  LH+ + PFLLRR+K DV + LPP
Sbjct: 1295 LGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK---RHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPP 1514          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: EP400_MOUSE (E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 64/199 (32.16%), Postives = 108/199 (54.27%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQ---QEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q I+   +L    G  GPH+VV     +  W  E++R+CP L+ + ++G+  E +  R+       F +C+TS++   +  +A  R  W+ +++DE  R+K       + +    +  RLL+   PL N   ELW++++FL+P I     +F    +   E +Q    ++V +LH+V +PF+LRR K DVEK L
Sbjct: 1119 LGKTVQIIAFFAHLACNEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGSHRELKAKRQEWTEPNNFHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDVPLHNTFLELWTMVHFLIPGISRPYLSFP--LKAPNEENQDYYHKMVIRLHRVTQPFILRRTKRDVEKQL 1315          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: Y018_MYCGE (Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium GN=MG018 PE=3 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 67/197 (34.01%), Postives = 108/197 (54.82%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT Q I  +   ++      P +++ P S L NW +E ++F P ++ V   GN +ER  + E+L    K  + + SF +   +   + +  + Y++IDEA  IKNENS ++K  +    N+ L +TGTP++N L +LWS  +F+LP    + + F + F+   +    E  Q+L K   PF+LRR K+ V K LP
Sbjct:  607 LGKTAQVIFAMLDSYQSTKSLLPSLIIVPASLLLNWKSEFQKFAPHVKIVTANGNFKERSQVYESL----KNQILLMSFNVLRSDIKWISQKKFHYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRLLDLWSCFDFVLPNFLGNKKQFSDQFE---KEKNDESFQKLMKKTSPFILRRTKNKVLKELP 796          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 69/221 (31.22%), Postives = 111/221 (50.23%), Query Frame = 1
Query:    1 LGKTLQTISLLGYL-----------HEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL--VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI---SGEXDQQEVVQ---------QLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q I+ L  L           + F G+ GP ++V P + +  W+ E   + P  R V  L       H +E L+  VA    + +TS+      +  + R+ W Y+I+DE H+I+N N+ ++   + + T +R++++G+P+QNNL ELWSL +F+ P    +   F E F +    G       VQ          L   + P+LLRR+KSDV+  L
Sbjct:  536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGL-GPTVIVCPTTVMHQWVKEFHTWWPPFR-VAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 754          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.870e-24
Identity = 66/198 (33.33%), Postives = 106/198 (53.54%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGK-FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEV-VQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q I+   ++ E      PH+++AP S LGNW  E++ F P L      G    RR   ++     +  DV +TS+ ++  +   L   +W  I +DEA  IKN ++  S+ +R     + + ++GTP++N L ELWS+ +F+      S   F + + +  E D+ E  + QL +++RPFLLRR K D E  L
Sbjct:  479 LGKTIQMIAYFLHVKESGRQKTPHLIIAPTSVLGNWQRELQTFAPDLSVALHYG---PRRPKGDDFAAHYENADVVLTSYGLSHADTEELSSVTWNTICLDEAQNIKNAHTKQSRAIRKLKGLHHIALSGTPMENRLTELWSIFDFMNKGYLGSLTGFHKRYVLPIEKDRDEKRIGQLQQLIRPFLLRRTKRDEEVAL 673          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 64/212 (30.19%), Postives = 115/212 (54.25%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSAL-----RRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP-EIFSSAETFDEWFQ--ISGEXDQQ----------EVVQQLHKVLRPFLLRRLKSDVEK 582
            LGKT+Q IS L  +++   +    ++V P S + NW+ E  ++ P +R  +F G+ +  R+ R    +  K  V +T+++M I     L     R F W Y+I+DEAH+IK  ++  +K+        R+L+TGTP+QNNL E+W+L +F     +  +++TF   ++  I+   ++            + Q L  +++P+ LRR K+DV++
Sbjct:  135 LGKTIQVISFLSGMYDAE-LANHTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERN-RNLERIQRKGGVIITTYQMLINNYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQ 344          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
MOT1_SCHPO1.082e-3134.84Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
MIT1_SCHPO5.028e-2935.96Chromatin remodeling factor mit1 OS=Schizosaccharo... [more]
YFC1_SCHPO1.911e-2837.14Uncharacterized ATP-dependent helicase C25A8.01c O... [more]
EP400_HUMAN1.048e-2633.67E1A-binding protein p400 OS=Homo sapiens GN=EP400 ... [more]
BTAF1_HUMAN1.788e-2632.29TATA-binding protein-associated factor 172 OS=Homo... [more]
EP400_MOUSE2.336e-2632.16E1A-binding protein p400 OS=Mus musculus GN=Ep400 ... [more]
Y018_MYCGE5.203e-2634.01Uncharacterized ATP-dependent helicase MG018 OS=My... [more]
ERCC6_HUMAN9.813e-2531.22DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
YWQA_BACSU4.870e-2433.33Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]
ERC6L_DANRE3.157e-2330.19DNA excision repair protein ERCC-6-like OS=Danio r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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