DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13 Identity = 60/222 (27.03%), Postives = 104/222 (46.85%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPH-----MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRH-----IRENLLVAGKF---DVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI---------SGEXDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKTLQ I+LL L + G ++ P S + NW NE+ ++ F+ + + + +++ V G+ V + S+E L ++ DE HR+KN +SL + N R++++GTP+QN+L E +SLLNF P + S + F + ++I E D++ + +L K++ F++RR + K LP Sbjct: 298 LGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLP 519
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13 Identity = 63/221 (28.51%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHM----VVAPKSTLGNWMNEIRRFC-----PVLRAVKFLGNPEERRHIRENLLVAGK---FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI---------SGEXDQQ---EVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKTLQ I+L+ L P + VV+P S + NW NE+ ++ P+ A+ E R + + G + + S+E L++ + +I DE HR+KN + + + NT+ R+LI+GTP+QN+L E +SL++F+ I +A F + F++ + E D+Q E +++L ++ L+RR + K LP Sbjct: 187 LGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPL--AIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLP 405
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe GN=SPBC582.10c PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12 Identity = 62/219 (28.31%), Postives = 106/219 (48.40%), Query Frame = 1 Query: 1 LGKTLQTISLL--GYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAI-----------------------KEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS-GEXDQQEVVQQLHKVLRPFLLRRLKSDVE 579 LGKT+Q I+L+ L + + +VVAP S + W +E++ L A+ + G + L V ++DV +T++++ + K+K +L F W II+DEAH IKN++S + R +TGTPLQNN+ EL+SL+ FL F+ + + + + ++ V ++L +L +LRR K+ +E Sbjct: 266 LGKTIQMIALILSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTKSK-LTAIVYHGASRYKL-----LKVIHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLE 478
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12 Identity = 51/179 (28.49%), Postives = 87/179 (48.60%), Query Frame = 1 Query: 64 GPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPEERR--HIRENLLVAGKFDVCVTSFEMAIKEK---SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVE 579 G +VV P S L W +E+ L GN E + ++R+ +D+ VT++++ +E SA+ WR II+DEAH ++N S S + YR +TGTP+QN ++++LL FL F T+ +W Q +L+ +++ +LRR K+ ++ Sbjct: 525 GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRD-------YDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWIDNKSAGGQ----NRLNLLMKSLMLRRTKAQLQ 692
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe GN=rhp16 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12 Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFC-PVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEM-----------------AIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFS 456 +GKT+QTI+LL L E RG P +VVAP + W EI L + G + R I L +DV +TS+ + +KEKS L + + II+DEAH IK+ ++ + T ++ ++GTPLQN + EL+SLL FL + F+ Sbjct: 285 MGKTIQTIALL--LSEPRG--KPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYG---QARDISGEEL--SSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFA 445
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae GN=RAD5 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12 Identity = 57/185 (30.81%), Postives = 89/185 (48.11%), Query Frame = 1 Query: 73 MVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPEERRHIRENLLVAGKF----DVCVTSFEMAIKEKSALRR-----------FSWRY--IIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGE-XDQQEVVQQLHKVLRPFLLRRLK 567 +VVAP S L W +E + ++ + GN E+ + L A D+ +TS+ + + E S+L FS R+ IIIDEAH IKN +S SK + +R +TGTP+ N L +L+SL+ FL E +++ + + + E D + + VL P +LRR K Sbjct: 575 LVVAPMSLLSQWQSEAEKASKDGTMKTELYYGN--EKSSNLQALCCASNAANAPDLVITSYGVVLSEFSSLAARNGDKSFHNGLFSLRFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWNNFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTK 757
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11 Identity = 46/177 (25.99%), Postives = 86/177 (48.59%), Query Frame = 1 Query: 64 GPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPE--ERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEK 582 G +++ P + L W +E+ + + + G + + I + +V + V ++++ + S R W I++DEAH IK+ + +K +++ R +TGTPLQN L +L+SLL FL E + + + + Q E ++ + +LRP +LRR K +K Sbjct: 741 GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDMAN-SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDK 916
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11 Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483 LGKTLQ +S L + + +VV P +T NWMNE ++ L+ + + P+ER ++ + G V + +EM +K + F+ +++ DE H +KNE S +SK M + R+++TGTPLQNNL E ++NF+ + S + F F Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11 Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483 LGKTLQ +S L + + +VV P +T NWMNE ++ L+ + + P+ER ++ + G V + +EM +K + F+ +++ DE H +KNE S +SK M + R+++TGTPLQNNL E ++NF+ + S + F F Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4) HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11 Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483 LGKTLQ +S L + + +VV P +T NWMNE ++ L+ + + P+ER ++ + G V + +EM +K + F+ +++ DE H +KNE S +SK M + R+++TGTPLQNNL E ++NF+ + S + F F Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |