DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 60/222 (27.03%), Postives = 104/222 (46.85%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPH-----MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRH-----IRENLLVAGKF---DVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI---------SGEXDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKTLQ I+LL  L +     G       ++  P S + NW NE+ ++        F+ + +  +      +++   V G+     V + S+E        L       ++ DE HR+KN +SL    +   N   R++++GTP+QN+L E +SLLNF  P +  S + F + ++I           E D++     + +L K++  F++RR    + K LP
Sbjct:  298 LGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLP 519          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 63/221 (28.51%), Postives = 108/221 (48.87%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHM----VVAPKSTLGNWMNEIRRFC-----PVLRAVKFLGNPEERRHIRENLLVAGK---FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI---------SGEXDQQ---EVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKTLQ I+L+  L        P +    VV+P S + NW NE+ ++      P+  A+      E  R +   +   G      + + S+E        L++ +   +I DE HR+KN  +   + +   NT+ R+LI+GTP+QN+L E +SL++F+   I  +A  F + F++         + E D+Q   E +++L  ++   L+RR    + K LP
Sbjct:  187 LGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPL--AIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLP 405          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe GN=SPBC582.10c PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 62/219 (28.31%), Postives = 106/219 (48.40%), Query Frame = 1
Query:    1 LGKTLQTISLL--GYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAI-----------------------KEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS-GEXDQQEVVQQLHKVLRPFLLRRLKSDVE 579
            LGKT+Q I+L+    L + +      +VVAP S +  W +E++     L A+ + G    +      L V  ++DV +T++++ +                       K+K +L  F W  II+DEAH IKN++S  +          R  +TGTPLQNN+ EL+SL+ FL    F+    + +   +   + ++  V ++L  +L   +LRR K+ +E
Sbjct:  266 LGKTIQMIALILSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTKSK-LTAIVYHGASRYKL-----LKVIHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLE 478          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 51/179 (28.49%), Postives = 87/179 (48.60%), Query Frame = 1
Query:   64 GPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPEERR--HIRENLLVAGKFDVCVTSFEMAIKEK---SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVE 579
            G  +VV P S L  W +E+        L      GN  E +  ++R+       +D+ VT++++  +E    SA+    WR II+DEAH ++N  S  S  +      YR  +TGTP+QN   ++++LL FL    F    T+ +W        Q     +L+ +++  +LRR K+ ++
Sbjct:  525 GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRD-------YDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWIDNKSAGGQ----NRLNLLMKSLMLRRTKAQLQ 692          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe GN=rhp16 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFC-PVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEM-----------------AIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFS 456
            +GKT+QTI+LL  L E RG   P +VVAP   +  W  EI       L    + G   + R I    L    +DV +TS+ +                  +KEKS L +  +  II+DEAH IK+     ++ +    T  ++ ++GTPLQN + EL+SLL FL  + F+
Sbjct:  285 MGKTIQTIALL--LSEPRG--KPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYG---QARDISGEEL--SSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFA 445          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae GN=RAD5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 57/185 (30.81%), Postives = 89/185 (48.11%), Query Frame = 1
Query:   73 MVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPEERRHIRENLLVAGKF----DVCVTSFEMAIKEKSALRR-----------FSWRY--IIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGE-XDQQEVVQQLHKVLRPFLLRRLK 567
            +VVAP S L  W +E  +      ++   + GN  E+    + L  A       D+ +TS+ + + E S+L             FS R+  IIIDEAH IKN +S  SK     +  +R  +TGTP+ N L +L+SL+ FL  E +++   +  +  +  E  D    +  +  VL P +LRR K
Sbjct:  575 LVVAPMSLLSQWQSEAEKASKDGTMKTELYYGN--EKSSNLQALCCASNAANAPDLVITSYGVVLSEFSSLAARNGDKSFHNGLFSLRFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWNNFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTK 757          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 46/177 (25.99%), Postives = 86/177 (48.59%), Query Frame = 1
Query:   64 GPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFLGNPE--ERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEK 582
            G  +++ P + L  W +E+        +  + + G     + + I  + +V   + V  ++++  +   S   R  W  I++DEAH IK+  +  +K     +++ R  +TGTPLQN L +L+SLL FL  E + +   + +  Q   E      ++ +  +LRP +LRR K   +K
Sbjct:  741 GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDMAN-SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDK 916          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483
            LGKTLQ +S L  +     +     +VV P +T  NWMNE  ++   L+         +  +  P+ER ++ +     G   V +  +EM         +K +     F+         +++ DE H +KNE S +SK M    +  R+++TGTPLQNNL E   ++NF+   +  S + F   F
Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483
            LGKTLQ +S L  +     +     +VV P +T  NWMNE  ++   L+         +  +  P+ER ++ +     G   V +  +EM         +K +     F+         +++ DE H +KNE S +SK M    +  R+++TGTPLQNNL E   ++NF+   +  S + F   F
Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483
            LGKTLQ +S L  +     +     +VV P +T  NWMNE  ++   L+         +  +  P+ER ++ +     G   V +  +EM         +K +     F+         +++ DE H +KNE S +SK M    +  R+++TGTPLQNNL E   ++NF+   +  S + F   F
Sbjct: 1598 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1780          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RAD54_SCHPO2.961e-1327.03DNA repair protein rhp54 OS=Schizosaccharomyces po... [more]
RAD54_MOUSE3.868e-1328.51DNA repair and recombination protein RAD54-like OS... [more]
YBMA_SCHPO1.125e-1228.31Uncharacterized ATP-dependent helicase C582.10c OS... [more]
TTF2_DROME1.920e-1228.49Transcription termination factor 2 OS=Drosophila m... [more]
RHP16_SCHPO9.527e-1233.53ATP-dependent helicase rhp16 OS=Schizosaccharomyce... [more]
RAD5_GIBZE9.527e-1230.81DNA repair protein RAD5 OS=Gibberella zeae GN=RAD5... [more]
SM3L3_ARATH2.122e-1125.99Putative SWI/SNF-related matrix-associated actin-d... [more]
ATRX_PONPY2.122e-1128.65Transcriptional regulator ATRX OS=Pongo pygmaeus G... [more]
ATRX_PANTR2.122e-1128.65Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
ATRX_HUMAN2.122e-1128.65Transcriptional regulator ATRX OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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