DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: GTA_NPVAC (Probable global transactivator OS=Autographa californica nuclear polyhedrosis virus GN=GTA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 47/198 (23.74%), Postives = 95/198 (47.98%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEK-SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKTL  + L+   +  +  T   ++V P S + +W+ E ++       +K+  + +    +    +V   +DV +  F++  + K S+L    W  +++DEAH IKN  + +           R  ITGTP+ N   +++S++NFL    F++      W  ++   D      ++  +++  +L+R KS++   +P
Sbjct:   61 LGKTLSVLMLIAKNNSLQLKT---LIVCPLSLINHWVTENKKHDLNFNILKYYKSLDADT-VEHYHIVVTTYDVLLAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNNPRV---WKMLNKNNDS---TNRIKSIIKKIVLKRDKSEISSNIP 248          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 50/192 (26.04%), Postives = 85/192 (44.27%), Query Frame = 1
Query:   73 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGN-PEERRHIRENLLVAGKFDVCVTSFEMAIKE--------------------KSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVV--QQLHKVLRPFLLRRLKSDVE 579
            ++V P S + +W NE+ +     R   +L + P   RH +    V   +D+ +T++ +  KE                     + L +  W  II+DEAH +KN     S  +       R  +TGTP+QNNL +++SL+ FL          FDE+     + D   +   ++L  + +  LLRR K  ++
Sbjct:  621 LIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAK----VLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFL------RCSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLD 802          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 62/236 (26.27%), Postives = 103/236 (43.64%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPH--MVVAPKSTLGNWMNEI--------RRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEM----AIKEKSALRRFSWRY------------IIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETF---------DEWFQISGEXDQQEVVQQ---LHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQ ++L   L      TG    ++++P ST+ NW  E         R    V    ++   P     + E     G   VC+  ++M    A ++   LR+                 ++ DE H +KNE + +SK +    T  R+++TGTPLQNNL E + ++ F+ P +  + + +         +  +  S E D + +  +   LHK+L   + RR  S +   LPP
Sbjct:  493 LGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGG---VCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPP 725          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483
            LGKTLQ +S L  +     +     +VV P +T  NWMNE  ++   L          +  +  P+ER ++ +     G   V +  +EM         +K +     F+         +++ DE H +KNE S +SK M    +  R+++TGTPLQNNL E   ++NF+   +  S + F   F
Sbjct: 1583 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKDIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1765          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 56/221 (25.34%), Postives = 100/221 (45.25%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIR-RFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKS-------------------ALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFL----LRRLKSDVEKGLP 591
            LGKT+QTI+LL        +   +++V   + L  W  E+  +  P  +   ++ +   ++++    L   ++DV +T++ M   E                     +L   SW  I++DEAH I+N ++L +K     +  YR  ++GTP+QN++ E +SLL FL  + +     F +      +  + ++V+   K LR  L     RR K      LP
Sbjct:  280 LGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYEL--SQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLP 498          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
GTA_NPVAC2.772e-1123.74Probable global transactivator OS=Autographa calif... [more]
TTF2_MOUSE4.728e-1126.04Transcription termination factor 2 OS=Mus musculus... [more]
ATRX_DROME4.728e-1126.27Transcriptional regulator ATRX homolog OS=Drosophi... [more]
ATRX_MOUSE6.175e-1128.65Transcriptional regulator ATRX OS=Mus musculus GN=... [more]
YF2C_SCHPO8.065e-1125.34Uncharacterized ATP-dependent helicase C17A2.12 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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