DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: GTA_NPVAC (Probable global transactivator OS=Autographa californica nuclear polyhedrosis virus GN=GTA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11 Identity = 47/198 (23.74%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEK-SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKTL + L+ + + T ++V P S + +W+ E ++ +K+ + + + +V +DV + F++ + K S+L W +++DEAH IKN + + R ITGTP+ N +++S++NFL F++ W ++ D ++ +++ +L+R KS++ +P Sbjct: 61 LGKTLSVLMLIAKNNSLQLKT---LIVCPLSLINHWVTENKKHDLNFNILKYYKSLDADT-VEHYHIVVTTYDVLLAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNNPRV---WKMLNKNNDS---TNRIKSIIKKIVLKRDKSEISSNIP 248
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11 Identity = 50/192 (26.04%), Postives = 85/192 (44.27%), Query Frame = 1 Query: 73 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGN-PEERRHIRENLLVAGKFDVCVTSFEMAIKE--------------------KSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVV--QQLHKVLRPFLLRRLKSDVE 579 ++V P S + +W NE+ + R +L + P RH + V +D+ +T++ + KE + L + W II+DEAH +KN S + R +TGTP+QNNL +++SL+ FL FDE+ + D + ++L + + LLRR K ++ Sbjct: 621 LIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAK----VLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFL------RCSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLD 802
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11 Identity = 62/236 (26.27%), Postives = 103/236 (43.64%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPH--MVVAPKSTLGNWMNEI--------RRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEM----AIKEKSALRRFSWRY------------IIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETF---------DEWFQISGEXDQQEVVQQ---LHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQ ++L L TG ++++P ST+ NW E R V ++ P + E G VC+ ++M A ++ LR+ ++ DE H +KNE + +SK + T R+++TGTPLQNNL E + ++ F+ P + + + + + + S E D + + + LHK+L + RR S + LPP Sbjct: 493 LGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGG---VCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPP 725
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11 Identity = 53/185 (28.65%), Postives = 85/185 (45.95%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGIT-GPHMVVAPKSTLGNWMNEIRRFCPVLR--------AVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMA--------IKEKSALRRFSWR-------YIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 483 LGKTLQ +S L + + +VV P +T NWMNE ++ L + + P+ER ++ + G V + +EM +K + F+ +++ DE H +KNE S +SK M + R+++TGTPLQNNL E ++NF+ + S + F F Sbjct: 1583 LGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKRPQERSYMLQRWQEDG--GVMIIGYEMYRNLAQGRNVKSRKLKDIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRF 1765
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11 Identity = 56/221 (25.34%), Postives = 100/221 (45.25%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIR-RFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKS-------------------ALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFL----LRRLKSDVEKGLP 591 LGKT+QTI+LL + +++V + L W E+ + P + ++ + ++++ L ++DV +T++ M E +L SW I++DEAH I+N ++L +K + YR ++GTP+QN++ E +SLL FL + + F + + + ++V+ K LR L RR K LP Sbjct: 280 LGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYEL--SQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLP 498 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |