DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 97/211 (45.97%), Postives = 143/211 (67.77%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + + GP++++ P STL NW  E  ++ P +  + + G P  RR +   L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    R+L+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  758 LGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 964          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 97/211 (45.97%), Postives = 143/211 (67.77%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+L+ YL E + + GP++++ P STL NW  E  ++ P +  + + G P  RR +   L  +GKF+V +T++E  IK+K  L +  W+Y+I+DE HR+KN +  L++ +   NT+Y    R+L+TGTPLQN L ELW+LLNFLLP IF S  TF++WF     ++GE    +++E   ++++LHKVLRPFLLRRLK +VE  LP
Sbjct:  753 LGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 959          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.527e-46
Identity = 90/204 (44.12%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF------QISGEXDQQE-VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L   +G  GPH++V P S + NW  E +++CP  + + + G+ +ER+  R        F VC+TS+++ ++++ + RR  W+Y+I+DEA  IKN  S   + +  ++T  RLL+TGTPLQN+L ELWSL++FL+P +FSS   F EWF       I G  +  E ++ +LHKV+RPFLLRRLK +VEK +P
Sbjct:  943 LGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLKKEVEKQMP 1146          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.317e-45
Identity = 94/216 (43.52%), Postives = 135/216 (62.50%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP--------EIFSSAETFDEWFQISGE-----------XDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L    G+ GPH+VV P S + NW  E +++CP  + + + GN EERR  R   +    ++V +TS+++ ++++  L+R SW Y+I+DEAH IKN  S   + +  + T  RLL+TGTPLQNNL ELWSLL FL+P        E F+    F EWF+   E            + ++VV +LH VLRP++LRRLK+DVEK +P
Sbjct:  812 LGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQMP 1027          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.247e-45
Identity = 93/212 (43.87%), Postives = 137/212 (64.62%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL----VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS----------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q I+ +  + + RG+ GP +V  P STL NWM E +RF P +  + + G  E+RR + +N+           V VTSFE+A+++++AL+   W+Y+I+DE HRIKN    L + ++ +N + +LL+TGTPLQNNL ELWSLLNFLLP++F   ++F+ WF I+           +  +Q V+  LH++L PFLLRRLKSDV   +PP
Sbjct:  235 LGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 445          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.247e-45
Identity = 92/212 (43.40%), Postives = 136/212 (64.15%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL----VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS----------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q I+ +  + + RG+ GP +V  P STL NWM E +RF P +  + + G  EER+ +  N+           V +TSFE+A+++++AL+   W+Y+I+DE HRIKN    L + ++ +N + +LL+TGTPLQNNL ELWSLLNFLLP++F   ++F+ WF I+           +  +Q V+  LH++L PFLLRRLKSDV   +PP
Sbjct:  252 LGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 462          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45
Identity = 95/213 (44.60%), Postives = 132/213 (61.97%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI--------FSSAETFDEWF------QISGEXDQQ--EVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL     I GPH+++ P S + NW  E +RF P  + + + GNP +RR  R        + VC+TS+++ +++  A RR  W Y+I+DEAH IKN  S   +++  +NT  RLL+TGTPLQNNL ELWSLL FL+P          F++ + F EWF       + G  D++    V +LH++LRP+LLRRLK DVEK +P
Sbjct:  938 LGKTIQTISLLSYLACEHHIWGPHLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRREKRRGWNKEDTWHVCITSYQLVLQDLFAFRRKRWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTPLQNNLMELWSLLYFLMPSSRNQMDMPGFANLKDFQEWFSRPIDKMVEGGVDEEAKTTVSKLHQILRPYLLRRLKKDVEKQMP 1150          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45
Identity = 92/218 (42.20%), Postives = 134/218 (61.47%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI---------FSSAETFDEWF------------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + G+P++RR  R+       F VC+TS+++ + ++ + +R  W+Y+I+DEAH IKN  S   + +  +NT  RLL+TGTPLQNNL ELWSLL FL+P+          F+  + F +WF                + + ++ V +LH+VLRP+LLRRLK+DVEK +P
Sbjct:  794 LGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRKGWNKPDAFHVCITSYQLVVHDQHSFKRKKWQYMILDEAHNIKNFRSTRWQALLNFNTERRLLLTGTPLQNNLAELWSLLYFLMPQTALENGKVSGFADLDAFQQWFGRPVDKIVETGENYEQDEETKKTVSKLHQVLRPYLLRRLKADVEKQMP 1011          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.536e-45
Identity = 92/205 (44.88%), Postives = 126/205 (61.46%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKTLQ ISLL YL  +  I GPH+V+ P S L NW  E++RFCP  + + + GN  ER   R        F +C++S+   +K+    +R  W+YII+DEAH IKN N+     +     +  LLITGTPLQN+L ELWSLL+FL+P IF+S   F EWF        + S     +E++ +LH V+RP++LRRLK +VEK +P
Sbjct:  691 LGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMP 895          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45
Identity = 93/216 (43.06%), Postives = 135/216 (62.50%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPE---------IFSSAETFDEWFQ----------ISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL +L   +G+ GPH+VVAP S + NW  E ++F P  + + + GN +ER+  R        F+VC+TS+++ + ++   RR  W Y+++DEAH IKN  S   +T+  +N+  RLL+TGTPLQNNL +LWSL+ FL+P           F++ + F +WF            S   + + +VQ+LH VLRP+LLRRLKS+VEK LP
Sbjct: 1019 LGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQLVLADQHIFRRKPWVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWSLMYFLMPNGATELPGGGAFANMKDFQDWFSNPLDKAIEGGTSMNDETRAMVQKLHAVLRPYLLRRLKSEVEKELP 1234          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SMCA2_MOUSE5.347e-4745.97Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN5.347e-4745.97Probable global transcription activator SNF2L2 OS=... [more]
DOM_DROME4.527e-4644.12Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
SWR1_EMENI1.317e-4543.52Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
HELLS_MOUSE2.247e-4543.87Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
HELLS_HUMAN2.247e-4543.40Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
SWR1_YARLI3.832e-4544.60Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
SWR1_KLULA3.832e-4542.20Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
HEPF1_PLAF76.536e-4544.88Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
SWR1_USTMA8.537e-4543.06Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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