DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 97/211 (45.97%), Postives = 143/211 (67.77%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + + GP++++ P STL NW E ++ P + + + G P RR + L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y R+L+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 758 LGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 964
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47 Identity = 97/211 (45.97%), Postives = 143/211 (67.77%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNY----RLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ----ISGE---XDQQE---VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+L+ YL E + + GP++++ P STL NW E ++ P + + + G P RR + L +GKF+V +T++E IK+K L + W+Y+I+DE HR+KN + L++ + NT+Y R+L+TGTPLQN L ELW+LLNFLLP IF S TF++WF ++GE +++E ++++LHKVLRPFLLRRLK +VE LP Sbjct: 753 LGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL---NTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 959
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 4.527e-46 Identity = 90/204 (44.12%), Postives = 135/204 (66.18%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF------QISGEXDQQE-VVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+LL +L +G GPH++V P S + NW E +++CP + + + G+ +ER+ R F VC+TS+++ ++++ + RR W+Y+I+DEA IKN S + + ++T RLL+TGTPLQN+L ELWSL++FL+P +FSS F EWF I G + E ++ +LHKV+RPFLLRRLK +VEK +P Sbjct: 943 LGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLKKEVEKQMP 1146
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.317e-45 Identity = 94/216 (43.52%), Postives = 135/216 (62.50%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP--------EIFSSAETFDEWFQISGE-----------XDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI+LL +L G+ GPH+VV P S + NW E +++CP + + + GN EERR R + ++V +TS+++ ++++ L+R SW Y+I+DEAH IKN S + + + T RLL+TGTPLQNNL ELWSLL FL+P E F+ F EWF+ E + ++VV +LH VLRP++LRRLK+DVEK +P Sbjct: 812 LGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQMP 1027
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 2.247e-45 Identity = 93/212 (43.87%), Postives = 137/212 (64.62%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL----VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS----------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q I+ + + + RG+ GP +V P STL NWM E +RF P + + + G E+RR + +N+ V VTSFE+A+++++AL+ W+Y+I+DE HRIKN L + ++ +N + +LL+TGTPLQNNL ELWSLLNFLLP++F ++F+ WF I+ + +Q V+ LH++L PFLLRRLKSDV +PP Sbjct: 235 LGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 445
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.247e-45 Identity = 92/212 (43.40%), Postives = 136/212 (64.15%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL----VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS----------GEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q I+ + + + RG+ GP +V P STL NWM E +RF P + + + G EER+ + N+ V +TSFE+A+++++AL+ W+Y+I+DE HRIKN L + ++ +N + +LL+TGTPLQNNL ELWSLLNFLLP++F ++F+ WF I+ + +Q V+ LH++L PFLLRRLKSDV +PP Sbjct: 252 LGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 462
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45 Identity = 95/213 (44.60%), Postives = 132/213 (61.97%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI--------FSSAETFDEWF------QISGEXDQQ--EVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISLL YL I GPH+++ P S + NW E +RF P + + + GNP +RR R + VC+TS+++ +++ A RR W Y+I+DEAH IKN S +++ +NT RLL+TGTPLQNNL ELWSLL FL+P F++ + F EWF + G D++ V +LH++LRP+LLRRLK DVEK +P Sbjct: 938 LGKTIQTISLLSYLACEHHIWGPHLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRREKRRGWNKEDTWHVCITSYQLVLQDLFAFRRKRWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTPLQNNLMELWSLLYFLMPSSRNQMDMPGFANLKDFQEWFSRPIDKMVEGGVDEEAKTTVSKLHQILRPYLLRRLKKDVEKQMP 1150
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45 Identity = 92/218 (42.20%), Postives = 134/218 (61.47%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI---------FSSAETFDEWF------------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISLL YL + GPH++V P S L NW E +RF P + + + G+P++RR R+ F VC+TS+++ + ++ + +R W+Y+I+DEAH IKN S + + +NT RLL+TGTPLQNNL ELWSLL FL+P+ F+ + F +WF + + ++ V +LH+VLRP+LLRRLK+DVEK +P Sbjct: 794 LGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRKGWNKPDAFHVCITSYQLVVHDQHSFKRKKWQYMILDEAHNIKNFRSTRWQALLNFNTERRLLLTGTPLQNNLAELWSLLYFLMPQTALENGKVSGFADLDAFQQWFGRPVDKIVETGENYEQDEETKKTVSKLHQVLRPYLLRRLKADVEKQMP 1011
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.536e-45 Identity = 92/205 (44.88%), Postives = 126/205 (61.46%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKTLQ ISLL YL + I GPH+V+ P S L NW E++RFCP + + + GN ER R F +C++S+ +K+ +R W+YII+DEAH IKN N+ + + LLITGTPLQN+L ELWSLL+FL+P IF+S F EWF + S +E++ +LH V+RP++LRRLK +VEK +P Sbjct: 691 LGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMP 895
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45 Identity = 93/216 (43.06%), Postives = 135/216 (62.50%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPE---------IFSSAETFDEWFQ----------ISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTISLL +L +G+ GPH+VVAP S + NW E ++F P + + + GN +ER+ R F+VC+TS+++ + ++ RR W Y+++DEAH IKN S +T+ +N+ RLL+TGTPLQNNL +LWSL+ FL+P F++ + F +WF S + + +VQ+LH VLRP+LLRRLKS+VEK LP Sbjct: 1019 LGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQLVLADQHIFRRKPWVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWSLMYFLMPNGATELPGGGAFANMKDFQDWFSNPLDKAIEGGTSMNDETRAMVQKLHAVLRPYLLRRLKSEVEKELP 1234 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |