DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.115e-44
Identity = 90/218 (41.28%), Postives = 136/218 (62.39%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI---------FSSAETFDEWF--------QISGEXDQ----QEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + GNP++R+  R+       F VC+ S+++ ++++ + +R  W+Y+++DEAH IKN  S   + +  +NT  R+L+TGTPLQNN+ ELWSLL FL+P+          F+  + F +WF        +  G  +Q    +  V++LH+VLRP+LLRRLK+DVEK +P
Sbjct:  657 LGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGNPQQRKEKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKKWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFLMPQTVIDGQKVSGFADLDAFQQWFGRPVDKLIETGGTYEQDNETKRTVEKLHQVLRPYLLRRLKADVEKQIP 874          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.484e-44
Identity = 96/202 (47.52%), Postives = 134/202 (66.34%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAG-----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTIS L YL     + GP ++V P STL +W  EI+ + P + AV +LG+   R  IR +  +       KF++ +T++E+ +K+KS L   +W +I +DEAHR+KN++SLL KT+  + +N+RLLITGTPLQN+L ELWSLL+F++PE FSS E F+E         ++     LHK L PFLLRR+K DVEK LP
Sbjct:  506 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE----EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLP 703          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.244e-44
Identity = 89/218 (40.83%), Postives = 134/218 (61.47%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI---------FSSAETFDEWF------------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + G+P++R+  R+       F VC+ S+++ ++++ + +R  W+Y+++DEAH IKN  S   + +  +NT  RLL+TGTPLQNNL ELWSLL FL+P+          F+  + F +WF                + + ++ V +LH+VLRP+LLRRLK+DVEK +P
Sbjct:  725 LGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADVEKQMP 942          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.533e-44
Identity = 88/217 (40.55%), Postives = 132/217 (60.83%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI---------FSSAETFDEWF-----------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL YL   +   GPH+++ P S L NW  E +RF P  + + + G+P++R+  R        F VC+TS+++ + ++ + +R  W+Y+I+DEAH IKN  S   + +  +NT  RLL+TGTPLQNN+ ELWSLL FL+P+          F+  + F +WF               + + +  V +LH+VLRP+LLRRLK+DVEK +P
Sbjct:  700 LGKTIQTIALLAYLACEKENWGPHLIIVPTSVLLNWEMEFKRFAPGFKVLSYYGSPQQRKEKRRGWNKLDAFHVCITSYQLVVHDQHSFKRKKWQYMILDEAHNIKNFKSTRWQALLNFNTRRRLLLTGTPLQNNIAELWSLLYFLMPQTALENGKISGFADLDAFQQWFGKPVDKIIAANDSEHDDETRRTVSKLHQVLRPYLLRRLKADVEKQMP 916          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.227e-44
Identity = 95/213 (44.60%), Postives = 134/213 (62.91%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI-----FSSAETFDEWF-----QI--SG----EXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L     + GPH+V+ P S + NW  E +++CP  + + + GN EER+  R+       ++VC+TS++M ++++   RR  W Y+I+DEAH IKN  S   +T+  +NT  RLL+TGTPLQNNL ELWSLL FL P       F     F  WF     QI  SG    + + + ++ +LHKVLRP+LLRRLK+DVEK +P
Sbjct:  974 LGKTIQTIALLAHLACHHEVWGPHLVIVPTSVMLNWEMEFKKWCPGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVLQDQQVFRRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLLYFLAPPENGEGGFVDLTEFHNWFARPESQILESGREQLDDEARAIIAKLHKVLRPYLLRRLKADVEKQMP 1186          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.227e-44
Identity = 92/202 (45.54%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAG-----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTIS L YL     + GP ++V P STL +W  E   + P +  V ++G+   R  IRE   +       KF+  +T++E+ +K+K+ L   +W ++ +DEAHR+KN++SLL KT+  + +N+RLLITGTPLQN+L ELWSLL+F++PE F   E F+E         ++   Q LHKVL PFLLRR+K DVEK LP
Sbjct:  513 LGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE----DHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLP 710          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.233e-43
Identity = 92/213 (43.19%), Postives = 138/213 (64.79%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEI-----FSSAETFDEWF-----QI--SG----EXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L     + GPH+V+ P S + NW  E +++CP  + + + G+ EER+  R+       ++VC+TS+++ ++++   +R  W Y+I+DEAH IKN  S   +T+  +NT  RLL+TGTPLQNNL ELWSLL FL+P       F+  + F +WF     QI  SG    + + + ++ +LHKVLRP+LLRRLK+DVEK +P
Sbjct:  840 LGKTIQTIALLAHLACTHEVWGPHLVIVPTSVMLNWEMEFKKWCPGFKILAYYGSQEERKRKRQGWNNDDIWNVCITSYQLVLQDQQVFKRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLLFFLMPAENGVGGFADLQEFHDWFAKPESQILESGREQMDDEARAIISKLHKVLRPYLLRRLKADVEKQMP 1052          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.233e-43
Identity = 88/212 (41.51%), Postives = 134/212 (63.21%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEW----FQISG-----EXDQQE------VVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+Q ++L+ YL EF+G  GPH+++ P + L NW +E+  + P +  + ++G  ++R  +    + A KF+V VT++E  + ++S L +  W+YIIIDEA R+K+  S+L++ +  Y    RLL+TGTPLQN+L ELWSLLN LLP++F + + F +W    FQ  G     E D  E      V+ +LH++L PF+LRR   DVE  LP
Sbjct: 1010 LGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLP 1221          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 1.610e-43
Identity = 88/204 (43.14%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ--ISGEXD-----QQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL ++     I GPH++V P S + NW  E +++CP L+ + + G  +ER   R+  +    F VC+TS++   ++  A ++ +W+Y+I+DEA  IKN  S   + +       RLL+TGTPLQN+L ELWSL++FL+P IFSS + F +WF   ++G  +        ++ +LHKVLRPF+LRRLK +VEK LP
Sbjct:  587 LGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLP 790          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.587e-43
Identity = 94/232 (40.52%), Postives = 132/232 (56.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFL---------LPEIFSSAETFDEWF-----------------QISGEXDQ---------QEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL     I GPH++V P S + NW  E ++F P  + + + G+P++R   R+       F VC+TS+++ + +  + +R  WRY+I+DEAH IKN  S   + +  +NT  RLL+TGTPLQNNL ELWSLL FL         +P+ F++ E F  WF                  +  E D+         +  V +LH+VLRP+LLRRLK DVEK +P
Sbjct:  810 LGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPNAFHVCITSYQLVVHDHQSFKRRRWRYMILDEAHNIKNFRSARWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPDGFANLEDFQTWFGRPVDKILEKTSNGTSSDVIDENDKTTQRMDEETRNTVSRLHQVLRPYLLRRLKKDVEKQMP 1041          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SWR1_CANGA1.115e-4441.28Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
CHD1_CHICK2.484e-4447.52Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
SWR1_YEAST3.244e-4440.83Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_ASHGO5.533e-4440.55Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
SWR1_NEUCR7.227e-4444.60Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
CHD2_HUMAN7.227e-4445.54Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
SWR1_GIBZE1.233e-4343.19Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
BRM_ARATH1.233e-4341.51ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
SSL1_CAEEL1.610e-4343.14Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]
SWR1_DEBHA3.587e-4340.52Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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