DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.587e-43
Identity = 90/216 (41.67%), Postives = 134/216 (62.04%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP--------EIFSSAETFDEWFQISGE-----------XDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L     + GPH+VV P S + NW  E +++CP  + + + G+ EERR  R+       ++V +TS+++ ++++  L+R +W Y+++DEAH IKN  S   +T+  + T  RLL+TGTPLQNNL ELWSLL FL+P        E F+    F EWF+   E            + + VV +LH +LRP++LRRLK+DVEK +P
Sbjct:  859 LGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGSIEERRQKRKGWTDDTSWNVLITSYQLVLQDQQVLKRRNWHYMVLDEAHNIKNFRSQKWQTLLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPSDGDGTGIEGFADLRNFSEWFRRPVEQILEHGRETMDDETKRVVTKLHTILRPYILRRLKADVEKQMP 1074          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.587e-43
Identity = 85/211 (40.28%), Postives = 136/211 (64.45%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR-------ENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD--------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+ISLL YL E   + GP +V+AP STL NW  E+ RF P L+A+ + G+P++R  +R       +       F + +TS+++A++++  L+   W+Y+I+DEA  IK+ +S   K++   +   RLL+TGTP+QN++HELW+LL+F++P++F S E F EWF    E          + E +++LH +L+PF+LRR+K  V+K L
Sbjct:  900 LGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELARFVPRLKALPYWGSPKDRETLRKIWSRKNQTFSEDSPFHILITSYQLAVQDEKYLQGMKWQYMILDEAQAIKSSSSARWKSLLSLHCRNRLLLTGTPIQNSMHELWALLHFIMPQLFDSHEEFAEWFSKDIESSSGGVTGNLKPEQLKRLHMILKPFMLRRVKKHVQKEL 1110          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.587e-43
Identity = 94/202 (46.53%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAG-----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTIS L YL     + GP ++V P STL +W  EI+ +   + AV +LG+   R  IR +  +       KF++ +T++E+ +K+K+ L   +W +I +DEAHR+KN++SLL KT+  + +N+RLLITGTPLQN+L ELWSLL+F++PE FSS E F+E         ++     LHK L PFLLRR+K DVEK LP
Sbjct:  508 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE----EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLP 705          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.684e-43
Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAG-----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTIS L YL     + GP ++V P STL +W  EI+ +   + AV +LG+   R  IR +          KF++ +T++E+ +K+K+ L   +W +I +DEAHR+KN++SLL KT+  + +N+RLLITGTPLQN+L ELWSLL+F++PE FSS E F+E         ++     LHK L PFLLRR+K DVEK LP
Sbjct:  510 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE----EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLP 707          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.044e-42
Identity = 81/197 (41.12%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT QTISLL Y      + GP +V+ P + L NW  E+ RFCP L  + + G+ E+R  +++NL    +F V +T++EM +K+   L+ + W+ +++DEAHR+KN+ SLL +T++ +   +R+L+TGTP+QNNL E++SLL F+ P +F      D     +    +  +V +LH+VL+PFLLRR+K++V   LP
Sbjct:   64 LGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQVLQPFLLRRVKAEVAAELP 260          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 86/214 (40.19%), Postives = 131/214 (61.21%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP-------EIFSSAETFDEWFQISGE----------XDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LL +L   +   GPH+++ P S + NW  E ++F P  + + + GNP+ER+  R        + VC+TS+++ +++    RR  W+Y+I+DEAH IKN  S   +++  +N  +RLL+TGTPLQNNL ELWSLL FL+P         F++ + F +WF    +           +    V +LH+VLRP+LLRRLK++VEK +P
Sbjct:  476 LGKTIQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKTEVEKQMP 689          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1L_HUMAN (Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 84/197 (42.64%), Postives = 130/197 (65.99%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT QTI+L  YL       GP +++ P S L NW  E++RF P L  V + G+ EER  ++++L    +F V +T++E+ +K+ S L+ F W  +++DEAHR+KN++SLL KT+  ++  + LL+TGTP+QN+L EL+SLL+F+ P++FS  E  D   +      + E   +LHK+L+PFLLRR+K++V   LP
Sbjct:   75 LGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELP 271          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/210 (40.48%), Postives = 135/210 (64.29%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--QISGEXDQ-----QEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+ISL+ YL E   I GP +V+AP STL NW  EI +F P L+A+ + GN ++R  +R+       +      F V VTS+++ + ++   +R  W+Y+I+DEA  IK+ +S+  KT+  +N   RLL+TGTP+QN++ ELW+LL+F++P +F S + F EWF   I    +Q     +  +++LH +L+PF+LRR+K +V+  L
Sbjct: 1027 LGKTVQSISLMAYLAEVHDIWGPFLVIAPASTLHNWQQEISKFVPTLKALPYWGNVKDRAVLRKFWNRKQISYNRDAPFHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSSSIRWKTLLGFNCRNRLLLTGTPVQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAEQKGTLNEHQLRRLHMILKPFMLRRIKKNVQNEL 1236          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.834e-42
Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFL---------LPEIFSSAETFDEWF---------QISG----------------EXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTISLL YL       GPH+++ P S + NW  E ++F P  + + + G+P++R   R+       F VC+TS+++ ++++ + +R  W Y+I+DEAH IKN  S   + +  +NT  RLL+TGTPLQNNL ELWSLL FL         +PE F++ + F +WF         Q S                 + + +  V +LH+VLRP+LLRRLK DVEK +P
Sbjct:  852 LGKTIQTISLLAYLACEHHKWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENERTTQKMDEETRNTVARLHQVLRPYLLRRLKKDVEKQMP 1082          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.154e-41
Identity = 88/210 (41.90%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE----NLLVAGK---FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L +   I GP +VV P STL NW+NEI RF P  + + + GN  +R+ +R+      L  G+   F V VTS++M + + S L++  W+Y+I+DEA  IK+  S   KT+  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F +WF    E          QE +++LH VL+PF+LRR+K +V+  L
Sbjct:  775 LGKTVQSISVLAHLADRYNIWGPFIVVTPASTLHNWVNEISRFVPQFKILPYWGNANDRKTLRKFWDRKHLRYGRDAPFHVMVTSYQMVVSDASYLQKMKWQYMILDEAQAIKSSQSSRWKTLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSDWFSKDIESHAESNTELNQEQLRRLHMVLKPFMLRRIKKNVQSEL 984          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SWR1_ASPFU3.587e-4341.67Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
INO80_CRYNE3.587e-4340.28Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
CHD1_MOUSE3.587e-4346.53Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN4.684e-4346.53Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
CHD1L_DANRE1.044e-4241.12Chromodomain-helicase-DNA-binding protein 1-like O... [more]
SWR1_SCHPO3.036e-4240.19Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
CHD1L_HUMAN3.036e-4242.64Chromodomain-helicase-DNA-binding protein 1-like O... [more]
INO80_USTMA5.179e-4240.48Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]
SWR1_CANAL8.834e-4239.39Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
INO80_KLULA1.154e-4141.90Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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