DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.507e-41
Identity = 85/210 (40.48%), Postives = 135/210 (64.29%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVAGK--FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + G+  +R+ +R+     NL  + K  F V +TS++M + + S L++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F+EWF    E          Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  751 LGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISKFVPQFKILPYWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFNEWFSRDIESHAEGNSSLNQQQLRRLHMILKPFMLRRIKKNVQSEL 960          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.507e-41
Identity = 81/205 (39.51%), Postives = 130/205 (63.41%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVA------GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQIS-------GEXDQQEVVQQLHKVLRPFLLRRLKSDV 576
            LGKT+Q ++ L +L E + I GP +VVAP S L NW +EI RFCP L+ + + G  +ER  +R+N+           F + +TS+++ + ++   RR  W+Y+++DEA  IK+ +S+  KT+  +N   RLL+TGTP+QNN+ ELW+LL+F++P +F + + F+EWF          G    +  + +LH +L+PF+LRR+K DV
Sbjct:  615 LGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDV 819          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.968e-41
Identity = 86/202 (42.57%), Postives = 132/202 (65.35%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI  L YL + + + GP + V P ST+  W  E +++ P +  V ++G+   R  IR+     +     KF+  +T++E+ +K++  LR FSW  +++DEAHR+KN++SLL K ++ ++TN+RLL+TGTPLQN+L ELW+LL+F++P  F S E F++      E    +  ++LHK L PF+LRR K DVEK LP
Sbjct:  234 LGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQWAPDINVVTYIGDVSSRDIIRQFEWSFSSSKRLKFNAILTTYEILLKDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNSLKELWALLHFIMPYKFESWEDFEK----DHEDAATKGYEKLHKQLEPFILRRQKKDVEKSLP 431          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.384e-41
Identity = 84/210 (40.00%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI+RF P L+ V + G+  +R+ +R+             +F V +TS++M + + +  ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S E F +WF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct: 1107 LGKTIQSISVMAYLAEHHDIWGPFLVVAPASTLHNWEQEIKRFVPDLKIVPYWGSASDRKILRKFWDRKHSTYKRDAQFHVAITSYQMVVSDVAYFQKMKWQYMILDEAQAIKSSQSSRWKCLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHEEFSDWFSKDIESHAQSNSKLNEDQLKRLHMILKPFMLRRVKKHVQKEL 1316          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.479e-41
Identity = 86/218 (39.45%), Postives = 131/218 (60.09%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGN---PEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF-----------------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+LL +++E     GP +V AP STL NWMNE  +F P L  +K+ G     E    ++      G   + +TS+E+ +++   +   +W+++I+DE HR+KN N  L K ++  NT+ RLL+TGTPLQNNL ELWSLLNF++P+IF+  E F++WF                 ++  +  Q+ ++  LH +L+PFLLRRLK  V   + P
Sbjct:  251 LGKTVQSIALLAFIYEM-DTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILP 467          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.767e-41
Identity = 89/217 (41.01%), Postives = 132/217 (60.83%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLP----------EIFSSAETFDEWF--------QISGEXDQQ--EVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI+LLG+L   +G+ G H+++ P S + NW  E ++F P ++ + + GN +ER+  R        + VC+TS+++ + ++   RR +W Y+I+DEAH IKN  S   +T+  +    RLL+TGTPLQNNL ELWSLL FL+P            F++ + F EWF        +     D++  E V +LH +LRPF+LRRLKS+VE  LP
Sbjct:  422 LGKTIQTIALLGHLACDKGVWGQHLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVLADQHIFRRKNWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLLYFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETVAKLHTLLRPFILRRLKSEVETQLP 638          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.666e-40
Identity = 84/210 (40.00%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R+     NL  +    F V VTS++M + + + L++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QN++ ELW+LL+F++P +F S + F+EWF    E          Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  741 LGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYSKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSEL 950          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.842e-40
Identity = 83/210 (39.52%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E  GI GP +VVAP STL NW  EI +F P L+ + + G   +R+ +R+              F V VTS+++ + + +  ++  W+Y+I+DEA  IK+  S   K++  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct:  870 LGKTVQSISVMAYLAEKHGIWGPFLVVAPASTLHNWQQEITKFVPRLKVLPYWGTAADRKVLRKFWDRKHITYTEDAPFHVLVTSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQKEL 1079          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.842e-40
Identity = 80/197 (40.61%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT QTI+L  YL       GP +++ P S L NW  E+ RF P L  V + G+ ++R  ++++L    +F V +T++E+ +K+ S L+ F W  +++DEAHR+KN++SLL KT+  ++  + LL+TGTP+QN+L EL+SLL+F+ P++FS  +  D   +      + E   +L+K+L+PFLLRR+K++V   LP
Sbjct:   77 LGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELP 273          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.712e-40
Identity = 84/210 (40.00%), Postives = 133/210 (63.33%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R+     NL       F V VTS++M + + + L++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QN++ ELW+LL+F++P +F S + F+EWF    E          Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  735 LGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSEL 944          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
INO80_CANGA1.507e-4140.48Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
INO80_ARATH1.507e-4139.51DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
CHD1_BOMMO1.968e-4142.57Chromodomain-helicase-DNA-binding protein 1 OS=Bom... [more]
INO80_MAGGR4.384e-4140.00Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
YFK8_YEAST7.479e-4139.45Uncharacterized ATP-dependent helicase YFR038W OS=... [more]
SWR1_CRYNE9.767e-4141.01Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
INO80_YEAS71.666e-4040.00Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_SCLS12.842e-4039.52Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
CHD1L_BOVIN2.842e-4040.61Chromodomain-helicase-DNA-binding protein 1-like O... [more]
INO80_YEAST3.712e-4040.00Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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