DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.712e-40
Identity = 83/210 (39.52%), Postives = 133/210 (63.33%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR-----ENLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R     +NL       F V +TS++M + + S L++  W+Y+I+DEA  IK+  S   + +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F++WF    E          Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  829 LGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISKFVPQFKILPYWGNSNDRKILRRFWDRKNLRYNKDSPFHVMITSYQMVVSDTSYLQKMKWQYMILDEAQAIKSSQSSRWRNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFNDWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSEL 1038          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.847e-40
Identity = 82/210 (39.05%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P  + + + G   +R+ +R+              F VCVTS+++ + + +  ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct: 1074 LGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRKFWDRKHTTYRKDAPFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSSQSSRWKALLNFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQKEL 1283          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.331e-40
Identity = 81/210 (38.57%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P L  + + G  ++R+ +R+              F V V+S+++ +++    ++  W+Y+I+DEA  IK+ NS   K++  +++  RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct:  850 LGKTVQSISVMAYLAERYNIWGPFLVIAPASTLHNWQQEIAKFVPDLNVIPYWGTAKDRKVLRKLWDRKHVTYTRDSPFHVVVSSYQLVVQDAQYFQKMRWQYMILDEAQAIKSSNSSRWKSLLNFHSRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQKEL 1059          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.331e-40
Identity = 80/209 (38.28%), Postives = 129/209 (61.72%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR----ENLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--QISGEXDQQEVVQQ-----LHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + + + GNP +R+ IR    +  L      F V +TS+++ +++    +R  W+Y+++DEA  +K+ +S+  K +  +    RLL+TGTP+QN + ELW+LL+F++P +F S E F+EWF   I    + +  + +     LH +L+PF+LRR+K DVE  L
Sbjct:  549 LGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 757          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.331e-40
Identity = 80/209 (38.28%), Postives = 129/209 (61.72%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR----ENLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--QISGEXDQQEVVQQ-----LHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + + + GNP +R+ IR    +  L      F V +TS+++ +++    +R  W+Y+++DEA  +K+ +S+  K +  +    RLL+TGTP+QN + ELW+LL+F++P +F S E F+EWF   I    + +  + +     LH +L+PF+LRR+K DVE  L
Sbjct:  547 LGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 755          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.331e-40
Identity = 80/210 (38.10%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + GN ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K++  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  827 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQEL 1036          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.269e-40
Identity = 83/211 (39.34%), Postives = 135/211 (63.98%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE----NLLVAGK---FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L YL E   I GP +VV P STL NW  EI RF P  + + + GN ++R+ +R+         GK   F V VTS+++ + + +  ++  W+Y+I+DEA  IK+  S   K++  ++   RLL+TGTP+QN++ ELW+LL+F++P +F S + F +WF        Q + E ++Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  596 LGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRKFWDRKNFRYGKDAPFHVLVTSYQLVVADAAYFQKMKWQYMILDEAQAIKSSQSSRWKSLLSFSCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFSDWFSKDIESHAQSNTELNEQQ-LRRLHVILKPFMLRRIKKNVQSEL 805          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.410e-39
Identity = 82/197 (41.62%), Postives = 126/197 (63.96%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT QTI+LL YL       GP +V+ P S L NW  E+ RF P L  V + G+ EER  ++++L     F V +T++E+ +K+ S L+ FSW  + +DEAHR+KN++SLL +T+  ++  +RLL+TGTP+QN+L EL+SLL  + P++F   +  D   +      + +   +LH++L+PFLLRR+K+ V   LP
Sbjct:   69 LGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATELP 265          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.842e-39
Identity = 82/210 (39.05%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P L+ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K++   +   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct:  825 LGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEIVKFVPDLKVLPYWGSAKDRKVLRKFWDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSSQSSRWKSLLGMHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRIKKHVQKEL 1034          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.842e-39
Identity = 81/211 (38.39%), Postives = 135/211 (63.98%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI++F P  + + + GN  +R+ +R               F V +TS++M + + + L++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QN++ ELW+LL+F++P +F S + F++WF        Q + + +QQ+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  684 LGKTVQSISVLAHLAERYNIWGPFIVVTPASTLHNWVNEIQKFVPDFKILPYWGNGNDRKILRRFWDRKHLRYSKDAPFHVMITSYQMIVSDAAYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNDWFSKDIESHAQSNTQLNQQQ-LRRLHMILKPFMLRRIKKNVQSEL 893          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
INO80_VANPO3.712e-4039.52Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]
INO80_GIBZE4.847e-4039.05Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_PHANO6.331e-4038.57Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
INO80_MOUSE6.331e-4038.28Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_HUMAN6.331e-4038.28Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
INO80_EMENI6.331e-4038.10Putative DNA helicase ino80 OS=Emericella nidulans... [more]
INO80_DEBHA8.269e-4039.34Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
CHD1L_MOUSE1.410e-3941.62Chromodomain-helicase-DNA-binding protein 1-like O... [more]
INO80_COCIM1.842e-3939.05Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
INO80_ASHGO1.842e-3938.39Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
back to top