DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  862 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRKFWDRKHITYTKESEFHVLVTSYQLVVLDSQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQEL 1071          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  862 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRKFWDRKHITYTKESEFHVLVTSYQLVVLDSQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQEL 1071          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  864 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKVLRKFWDRKHITYTKESEFHVLVTSYQLVVLDSQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFSCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQEL 1073          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  847 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQQEL 1056          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  662 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFSCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQQEL 871          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + G+ ++R+ +R+             +F V VTS+++ + +    ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V++ L
Sbjct:  852 LGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPDIKVLPYWGSAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQEL 1061          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 7.000e-39
Identity = 81/210 (38.57%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVA--GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI RF P L+ + + G+ ++R+ +R+     N+       F V VTS+++ + +    +   W+Y+I+DEA  IK+ +S   K++  +    RLL+TGTP+QN + ELW+LL+F++P +F S   F EWF    E   Q       + +++LH +L+PF+LRR+K +V+  L
Sbjct:  871 LGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQSEL 1080          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.660e-38
Identity = 80/210 (38.10%), Postives = 127/210 (60.48%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQ-------EVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P  + + + G   +R+ +R+              F V +TS+++ + + +  ++  W+Y+I+DEA  IK+  S   K +  ++   RLL+TGTP+QNN+ ELW+LL+F++P +F S + F EWF    E   Q       + +++LH +L+PF+LRR+K  V+K L
Sbjct: 1147 LGKTVQSISVMAYLAEKYDIWGPFLVVAPASTLHNWQQEITKFVPQFKVLPYWGTAGDRKVLRKFWDRKHTTYKKDAPFHVMITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSQSSRWKCLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQKEL 1356          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 89/221 (40.27%), Postives = 128/221 (57.92%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGK-----------------------FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+LL  L E   I  PH+V+AP STL NW  E   + P +  V + G  + R  IRE+     K                       FDV +TS+EM   + + L+   W  +I+DE HR+KN++S L  ++  Y++N+R+L+TGTPLQNNL EL+ L++FL    F S E F E F+   + +Q+E + +LHK+L P LLRR+K DV K +PP
Sbjct:  302 LGKTIQSIALLASLFEENLI--PHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK---DINQEEQISRLHKMLAPHLLRRVKKDVMKDMPP 517          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 78/209 (37.32%), Postives = 129/209 (61.72%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVA-GKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXD-------QQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+I+ L ++ E  G+ GP +V++P STL NW  E+ RF P  + V + G+P ER+ +R+     +L      F V +TS+++ + +     R  W+Y+++DEA  IK+  S   K +  ++   RLL++GTP+QN++ ELW+LL+F++P +F S + F+EWF    E          ++ + +LH +L+PF+LRR+K DVE  L
Sbjct:  564 LGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENEL 772          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
INO80_NEOFI2.406e-3937.62Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPFU2.406e-3937.62Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
INO80_ASPCL2.406e-3937.62Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_ASPTN3.142e-3937.62Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPOR3.142e-3937.62Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPNC3.142e-3937.62Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_SCHPO7.000e-3938.57Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_NEUCR2.660e-3838.10Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]
PKL_ARATH5.926e-3840.27CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
INO80_DROME5.926e-3837.32Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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