DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 80/211 (37.91%), Postives = 131/211 (62.09%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L YL E   + GP +VV P STL NW  EI +F P  + + + GN ++R+ +R+              F V VTS+++ + + +  ++  W+Y+I+DEA  IK+ +S   K++       RLL+TGTP+QN++ ELW+LL+F++P IF S + F +WF        Q +   D+Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  701 LGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQ-LRRLHMILKPFMLRRIKKNVQSEL 910          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 82/206 (39.81%), Postives = 130/206 (63.11%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVAGK----FDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QT++ + +L   R   GPH++V P ST+  W++   ++ P L  + ++GN + R  IRE     N    GK    F+V +T++E  +K+++ L    W+++ +DEAHR+KN  S L +++  +    R+LITGTPLQNN+ EL +L+NFL+P  F+  +  D  F+   E +Q+E +  LH+ ++PF+LRRLK DVEK LP
Sbjct:  405 LGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID--FENQDE-EQEEYIHDLHRRIQPFILRRLKKDVEKSLP 607          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.320e-37
Identity = 80/202 (39.60%), Postives = 127/202 (62.87%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-----NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI  L  L +   + GP + V P ST+  W  E   + P +  V +LG+ + R  I++           KF+  +T++E+ +K+K  L    W  +++DEAHR+KN++SLL K+++ ++TN+RLLITGTPLQN+L ELW+LL+F++P+ F + E     F++     + +   +LH+ L P++LRR+K DVEK LP
Sbjct:  557 LGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWEN----FEVQHGNAEDKGYTRLHQQLEPYILRRVKKDVEKSLP 754          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.724e-37
Identity = 84/209 (40.19%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGK-FDVCVTSFEMAIK---EKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAET-----FDEWFQISGEXD--QQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q I+ L YL++  G  GPH++V P ST+ NW+ E+  +CP L+ + + G+ EER+ IR N+    + ++V VT++  AI    ++S  RR    Y I DE H +KN  S+  + +   N N RLL+TGTP+QNNL EL SLLNF++P +FSS+ +     F    + + E    ++E +    ++++PF+LRR+K +V K LPP
Sbjct:  526 LGKTIQAIAFLAYLYQ-EGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPP 733          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.252e-37
Identity = 79/211 (37.44%), Postives = 131/211 (62.09%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-------NLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF--------QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 588
            LGKT+Q+IS+L YL E   I GP +VV P STL NW  EI +F P  + + + G+ ++R+ +R+              F V VTS+++ + + +  ++  W+Y+I+DEA  IK+  S   K++   +   RLL+TGTP+QN++ ELW+LL+F++P +F S + F +WF        Q +   D+Q+ +++LH +L+PF+LRR+K +V+  L
Sbjct:  766 LGKTVQSISVLSYLAETHNIWGPFLVVTPASTLHNWQQEISKFVPNFKVLPYWGHAKDRKVLRKFWDRKSLRYDKDAPFHVLVTSYQLIVSDIAYFQKMKWQYMILDEAQAIKSSQSSRWKSLLSLSCRNRLLLTGTPIQNSMQELWALLHFIMPTLFDSHDEFSDWFSKDIESHAQSNTGLDEQQ-LRRLHMILKPFMLRRIKKNVQSEL 975          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.941e-37
Identity = 86/205 (41.95%), Postives = 121/205 (59.02%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAG------KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAE--TFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QT+  L YL       GP ++V P ST+  W   +  + P L ++ + GN E R +IRE            KF++ +T++E  +K+K  L    W+Y+ IDEAHR+KN  S L +T+  + T  RLLITGTPLQNNL EL SL+NFL+P  F   +   FD+        +Q+  ++ L + L+PF+LRRLK DVEK LP
Sbjct:  419 LGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELNFDQ-----PNAEQERDIRDLQERLQPFILRRLKKDVEKSLP 618          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL------VAG-------------KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+Q+++ L  L +     GP ++ AP ST+ NW  E   +CP    V ++G+ E R  IRE+        V G             KF V +TS+E    +K+ L    W  +++DEAHR+KN  S   K +R YN  YR+L+TGTPLQNNL EL+ LLNFL P+ F+  E+F   F    E  +++ +++LH +L P +LRRLK+DV  G+P
Sbjct:  645 LGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEF---SEISKEDQIEKLHNLLGPHMLRRLKADVLTGMP 857          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 86/209 (41.15%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR---------ENLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L  ++  +GI GP +V+AP ST+ NW  E R +   L  V + G+   RR I+         +  ++ G  KF   +T+FEM + +   LR   WR ++IDEAHR+KN N  L + +++ +  +++L+TGTPLQN + EL+SLL+FL P  F S  TF + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  987 LGKTIQSITFLYEIY-LKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 1190          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 86/209 (41.15%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR---------ENLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L  ++  +GI GP +V+AP ST+ NW  E R +   L  V + G+   RR I+         +  ++ G  KF   +T+FEM + +   LR   WR ++IDEAHR+KN N  L + +++ +  +++L+TGTPLQN + EL+SLL+FL P  F S  TF + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  997 LGKTIQSITFLYEIY-LKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 1200          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 86/209 (41.15%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR---------ENLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L  ++  +GI GP +V+AP ST+ NW  E R +   L  V + G+   RR I+         +  ++ G  KF   +T+FEM + +   LR   WR ++IDEAHR+KN N  L + +++ +  +++L+TGTPLQN + EL+SLL+FL P  F S  TF + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  998 LGKTIQSITFLYEIY-LKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 1201          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
INO80_CANAL7.739e-3837.91Putative DNA helicase INO80 OS=Candida albicans GN... [more]
CHD1_YEAST7.739e-3839.81Chromo domain-containing protein 1 OS=Saccharomyce... [more]
CHD1_DROME1.320e-3739.60Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
SMRCD_HUMAN1.724e-3740.19SWI/SNF-related matrix-associated actin-dependent ... [more]
INO80_LODEL2.252e-3737.44Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]
HRP1_SCHPO2.941e-3741.95Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
CHD3_CAEEL6.552e-3739.81Chromodomain-helicase-DNA-binding protein 3 homolo... [more]
CHD7_MOUSE3.252e-3641.15Chromodomain-helicase-DNA-binding protein 7 OS=Mus... [more]
CHD7_HUMAN3.252e-3641.15Chromodomain-helicase-DNA-binding protein 7 OS=Hom... [more]
CHD7_CHICK5.546e-3641.15Chromodomain-helicase-DNA-binding protein 7 OS=Gal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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