DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36 Identity = 87/216 (40.28%), Postives = 122/216 (56.48%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL-------------------VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI L L++ GP++V AP ST+ NW E + P V + G+ E R IREN V KF V +TS+E+ +++ L W +++DEAHR+KN S + + Y +Y+LL+TGTPLQNNL EL+ LLNFL PE F++ E F E F + DQ +++LH +L P +LRRLK+DV K +P Sbjct: 729 LGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ---IKKLHDLLGPHMLRRLKADVFKNMP 941
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36 Identity = 85/209 (40.67%), Postives = 127/209 (60.77%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q+I+ L + RGI GP +++AP ST+ NW E R + + A+ + G+ R+ I++ +V KF V +T+FEM + + L++ W +IIDEAHR+KN N L + ++L +++L+TGTPLQN++ EL+SLLNFL P F S F E F G+ +E V++L +L+P +LRRLK DVEK L P Sbjct: 490 LGKTIQSITFLSEIF-LRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEF---GDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAP 693
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35 Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGK-FDVCVTSFEMAIK---EKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAET-----FDEWFQISGEXD--QQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q I+ L YL + G GPH++V P ST+ NW+ E+ +CP L + + G+ EER+ IR N+ + ++V VT++ AI ++S RR Y I DE H +KN S+ + + N RLL+TGTP+QNNL EL SLLNF++P +FSS+ + F + + E ++E + ++++PF+LRR+K +V K LPP Sbjct: 521 LGKTIQAIAFLAYLFQ-EGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKLLPP 728
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35 Identity = 84/209 (40.19%), Postives = 125/209 (59.81%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE---------NLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q+I+LL + G+ P M++AP ST+ NW E + + A+ + G+ R+ I++ L+ G KFD +T+FEM + + LR SWR ++IDEAHR+KN N L ++++ +++L+TGTPLQN + EL+SLL+FL P F S F F G+ +E VQ+L +L+P +LRRLK DVEK L P Sbjct: 876 LGKTIQSIALLSEMFS-AGVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREF---GDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAP 1079
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35 Identity = 85/213 (39.91%), Postives = 121/213 (56.81%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL-LVAGKFDVCVTSFEMAIKEK---SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIF-SSAETFDEWFQISGEXDQ----------QEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT Q IS YL + GPH+VV P STL NW+ E ++F P L+ + G+ +ER +R+ L AGK+DV VT++ +A K S L+ ++ ++ DE H +KN S + N+RLL+TGTPLQNNL EL SLL F++P +F S E+FD F+ + QE + + +++PF+LRR K V K LPP Sbjct: 601 LGKTCQVISFFAYLKQINE-PGPHLVVVPSSTLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKHLPP 812
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35 Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL------VAG-------------KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QTI L L++ GP +V AP ST+ NW E + + P V + G+ + R IREN + G KF V +TS+E+ +++AL W +++DEAHR+KN S + + Y +++LL+TGTPLQNNL EL+ LLNFL PE F++ E F E F + DQ +++LH +L P +LRRLK+DV K +P Sbjct: 765 LGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ---IKKLHDLLGPHMLRRLKADVFKNMP 977
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 8.009e-35 Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-NLLVAG----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591 LGKT+QT++ L YL GP +VV P ST+ W + + + + +LGN R+ IR+ V G KF++ +T++E +K++S L W+Y+ IDEAHR+KN S L + + + + RLLITGTPLQNN+ EL +L++FL+P F E +E + + +Q+ ++ L + L+P++LRRLK DVEK LP Sbjct: 404 LGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF---EIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLP 602
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34 Identity = 85/209 (40.67%), Postives = 126/209 (60.29%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE---------NLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q+I+ L ++ GI GP +V+AP ST+ NW E + + + + G+ R+ I++ L+ G KFD +T+FEM + + LR WR +IIDEAHR+KN N L +++ + +++L+TGTPLQN + EL+SLL+FL P FSS F + F G+ +E VQ+L +L+P +LRRLK DVEK L P Sbjct: 784 LGKTIQSITFLQEVYNV-GIRGPFLVIAPLSTITNWEREFGSWTQ-MNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFSSEAEFLKDF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 987
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34 Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q+I+ L Y GI GP +++AP ST+ NW E R + + V + G+ R+ I++ + A +F +T+FEM + L WR +IIDEAHR+KN+N L + ++L N +++L+TGTPLQN + EL+SLL+FL P F S TF + F G+ +E VQ+L +L+P +LRRLK DVEK L P Sbjct: 888 LGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP 1091
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34 Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKT+Q+I+ L Y GI GP +++AP ST+ NW E R + + V + G+ R+ I++ + A +F +T+FEM + L WR +IIDEAHR+KN+N L + ++L N +++L+TGTPLQN + EL+SLL+FL P F S TF + F G+ +E VQ+L +L+P +LRRLK DVEK L P Sbjct: 889 LGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP 1092 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |