DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 87/216 (40.28%), Postives = 122/216 (56.48%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL-------------------VAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI  L  L++     GP++V AP ST+ NW  E   + P    V + G+ E R  IREN                     V  KF V +TS+E+   +++ L    W  +++DEAHR+KN  S   + +  Y  +Y+LL+TGTPLQNNL EL+ LLNFL PE F++ E F E F    + DQ   +++LH +L P +LRRLK+DV K +P
Sbjct:  729 LGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ---IKKLHDLLGPHMLRRLKADVFKNMP 941          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 85/209 (40.67%), Postives = 127/209 (60.77%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L  +   RGI GP +++AP ST+ NW  E R +   + A+ + G+   R+ I++  +V             KF V +T+FEM + +   L++  W  +IIDEAHR+KN N  L + ++L    +++L+TGTPLQN++ EL+SLLNFL P  F S   F E F   G+   +E V++L  +L+P +LRRLK DVEK L P
Sbjct:  490 LGKTIQSITFLSEIF-LRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEF---GDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAP 693          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35
Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGK-FDVCVTSFEMAIK---EKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAET-----FDEWFQISGEXD--QQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q I+ L YL +  G  GPH++V P ST+ NW+ E+  +CP L  + + G+ EER+ IR N+    + ++V VT++  AI    ++S  RR    Y I DE H +KN  S+  + +   N   RLL+TGTP+QNNL EL SLLNF++P +FSS+ +     F    + + E    ++E +    ++++PF+LRR+K +V K LPP
Sbjct:  521 LGKTIQAIAFLAYLFQ-EGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKLLPP 728          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 84/209 (40.19%), Postives = 125/209 (59.81%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE---------NLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+LL  +    G+  P M++AP ST+ NW  E   +   + A+ + G+   R+ I++           L+ G  KFD  +T+FEM + +   LR  SWR ++IDEAHR+KN N  L  ++++    +++L+TGTPLQN + EL+SLL+FL P  F S   F   F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  876 LGKTIQSIALLSEMFS-AGVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREF---GDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAP 1079          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35
Identity = 85/213 (39.91%), Postives = 121/213 (56.81%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL-LVAGKFDVCVTSFEMAIKEK---SALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIF-SSAETFDEWFQISGEXDQ----------QEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT Q IS   YL +     GPH+VV P STL NW+ E ++F P L+   + G+ +ER  +R+ L   AGK+DV VT++ +A   K   S L+  ++  ++ DE H +KN  S     +     N+RLL+TGTPLQNNL EL SLL F++P +F S  E+FD  F+   +             QE + +   +++PF+LRR K  V K LPP
Sbjct:  601 LGKTCQVISFFAYLKQINE-PGPHLVVVPSSTLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKHLPP 812          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35
Identity = 86/216 (39.81%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL------VAG-------------KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QTI  L  L++     GP +V AP ST+ NW  E + + P    V + G+ + R  IREN        + G             KF V +TS+E+   +++AL    W  +++DEAHR+KN  S   + +  Y  +++LL+TGTPLQNNL EL+ LLNFL PE F++ E F E F    + DQ   +++LH +L P +LRRLK+DV K +P
Sbjct:  765 LGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ---IKKLHDLLGPHMLRRLKADVFKNMP 977          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.009e-35
Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE-NLLVAG----KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 591
            LGKT+QT++ L YL       GP +VV P ST+  W   +  +   +  + +LGN   R+ IR+    V G    KF++ +T++E  +K++S L    W+Y+ IDEAHR+KN  S L + +  +  + RLLITGTPLQNN+ EL +L++FL+P  F   E  +E    + + +Q+  ++ L + L+P++LRRLK DVEK LP
Sbjct:  404 LGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF---EIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLP 602          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 85/209 (40.67%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE---------NLLVAG--KFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L  ++   GI GP +V+AP ST+ NW  E   +   +  + + G+   R+ I++           L+ G  KFD  +T+FEM + +   LR   WR +IIDEAHR+KN N  L  +++  +  +++L+TGTPLQN + EL+SLL+FL P  FSS   F + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  784 LGKTIQSITFLQEVYNV-GIRGPFLVIAPLSTITNWEREFGSWTQ-MNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFSSEAEFLKDF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 987          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L Y     GI GP +++AP ST+ NW  E R +  +   V + G+   R+ I++  +            A +F   +T+FEM +     L    WR +IIDEAHR+KN+N  L + ++L N  +++L+TGTPLQN + EL+SLL+FL P  F S  TF + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  888 LGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP 1091          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV-----------AGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKT+Q+I+ L Y     GI GP +++AP ST+ NW  E R +  +   V + G+   R+ I++  +            A +F   +T+FEM +     L    WR +IIDEAHR+KN+N  L + ++L N  +++L+TGTPLQN + EL+SLL+FL P  F S  TF + F   G+   +E VQ+L  +L+P +LRRLK DVEK L P
Sbjct:  889 LGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF---GDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP 1092          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
CHD5_HUMAN7.244e-3640.28Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
CHD6_HUMAN9.460e-3640.67Chromodomain-helicase-DNA-binding protein 6 OS=Hom... [more]
SMRCD_MOUSE2.108e-3539.71SWI/SNF-related matrix-associated actin-dependent ... [more]
CHD8_DANRE3.595e-3540.19Chromodomain-helicase-DNA-binding protein 8 OS=Dan... [more]
FUN30_YEAST4.695e-3539.91Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]
CHD3_HUMAN4.695e-3539.81Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
HRP3_SCHPO8.009e-3539.60Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
CHD8_XENTR1.046e-3440.67Chromodomain-helicase-DNA-binding protein 8 OS=Xen... [more]
CHD9_MOUSE2.330e-3440.67Chromodomain-helicase-DNA-binding protein 9 OS=Mus... [more]
CHD9_HUMAN2.330e-3440.67Chromodomain-helicase-DNA-binding protein 9 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
back to top