DN617433

Overview
NameDN617433
Unique NameDN617433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L4_MOUSE (Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3 
Query:  261 LKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEES 500
            ++   +LAA+Q           + +E LP  VK+R+NALK LQ+   ++EAKFYEEVH LE KY  LY P+ +KR+  +TG  EPT  ES
Sbjct:   32 MQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAES 121
[Close]
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L4_HUMAN (Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.030e-13
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  303 VENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEES 500
            +E LP  VK+R+NALK LQ+   ++EAKFYEEVH LE KY  LY P+ +KR+  +TG  EPT  ES
Sbjct:   56 IETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAES 121
The following BLAST results are available for this feature:
BLAST of DN617433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NP1L4_MOUSE7.883e-1445.56Nucleosome assembly protein 1-like 4 OS=Mus muscul... [more]
NP1L4_HUMAN1.030e-1356.06Nucleosome assembly protein 1-like 4 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617433 ID=DN617433; Name=DN617433; organism=Citrus sinensis; type=EST; length=599bp
GAAGAGGCGCCGTGCGAGAAAAATAACTTGTTCGTTCCCGGTATTCTTCA
TTCAGTATTCGTTGAATTAAGCCTAATTTATTGCGTTGCCAACATCAACG
AGTTCTGTTTCTAAGAATCCTAGTTACCCTCACGCTATATTGAAGTATTC
GAAAAATGTCGGTTACTTCAGAAGGTATGTCTTCTGGCTCGGCTTCCGGA
TCCGAAGAGAACGAAAATACAGACAGCAACAAGCCTTTAATTAATGCTTC
CGGCGATTACTTGAAGAAGTCGGATATTCTCGCTGCTATTCAATATGCTC
AAGTTGAAAACTTACCGGCCCCTGTTAAGAAACGTGTAAATGCCTTGAAA
AATCTACAGTTAGATGTTACGAATCTAGAGGCCAAGTTCTACGAAGAGGT
TCATTTACTAGAATGCAAGTACAATAAACTGTATTTTCCTATTCATGAAA
AGCGACAACTTATCGTCACTGGACAATATGAACCTACTGCCGAAGAAAGT
GAGTGGAAGTTGGATTTGATGGAAGATCTGAAAGAGAAAGCAAAATTGGA
AGAAACTACTGAGAAAACCGATGACAGTACTAAAGACGATAGTTCAATC
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