DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_DEIGD (Phosphoenolpyruvate carboxykinase [ATP] OS=Deinococcus geothermalis (strain DSM 11300) GN=pckA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.892e-26
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  264 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 590
            +YA +LA+K+++ GA  WLVNTGW+GG YG G R+ +  TR +I+A   G L    + + P FGLEIPTE+ GVP E+L+P   W+D  AY  T  KL  +F++NF+ F
Sbjct:  403 EYARLLAQKVRESGANVWLVNTGWTGGQYGEGQRMSIQHTRTLINAALSGQLDNVKFEREPFFGLEIPTEVPGVPKEVLNPREAWADKAAYDRTARKLARMFRENFKRF 511          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_PELPD (Phosphoenolpyruvate carboxykinase [ATP] OS=Pelobacter propionicus (strain DSM 2379) GN=pckA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = -1
Query:  273 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNF 587
            Y  +L EK+ +H  + WLVNTGW+GG YG G RI+++++R +I+A   GTL + S+   P FGL IPT   GVPSE+L+P NTWSD   Y DT  +L  +F+ NF
Sbjct:  411 YGELLREKISRHNVSCWLVNTGWNGGPYGVGERIRISYSRALINAALDGTLADGSFETDPFFGLAIPTSCPGVPSEMLNPRNTWSDPARYDDTASRLVAMFRSNF 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA2_SALRD (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Salinibacter ruber (strain DSM 13855) GN=pckA2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.671e-26
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYA MLAEK++ H A  WLVNTG +GG YG G+R+ L  TR +IDAIH G+LL+A     PVFGL++PTE   VP++IL P  TW D +AY +    L  LF  +FE +       +++    I  AGP
Sbjct:  404 KYAEMLAEKIRAHDAEAWLVNTGITGGPYGVGHRVPLEHTRAMIDAIHDGSLLDAPKKTEPVFGLDVPTECPNVPNDILMPRETWDDPQAYDEKAEHLVGLFHDHFEKY-------EDEAAPAIAEAGP 525          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_LYSSC (Phosphoenolpyruvate carboxykinase [ATP] OS=Lysinibacillus sphaericus (strain C3-41) GN=pckA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.133e-25
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  258 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVN 587
            YA ML +K+ +HGA  +LVNTGW+GG YG+G+R+KL++TR ++ A   G L     T+  VFGL IPT +EGVPS++L+P   W+D  AY     +L  LF +NF+ F N
Sbjct:  406 YAEMLGQKIDEHGAQVYLVNTGWTGGEYGTGSRMKLSYTRTMVRAAIDGKLTNVETTQDAVFGLHIPTAVEGVPSQVLNPREAWADKAAYDAKAAELAGLFNENFKKFAN 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACWK (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus weihenstephanensis (strain KBAB4) GN=pckA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.133e-25
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = -1
Query:  264 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 590
            +YA ML EK++KH A  +LVNTGW+GG YG G R+ L +TR +I A   G L +A   K  +FGLE+P  + GVP E+L PE TW+D  AYK   ++L   FK+NF+ F
Sbjct:  405 RYAEMLGEKIEKHDAKVFLVNTGWTGGEYGVGKRMNLGYTRAMIQAALSGELAKAETAKHDIFGLEVPRHVPGVPDEVLMPEQTWADKDAYKVKAIELANEFKENFKKF 513          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACC2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus cereus (strain G9842) GN=pckA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = -1
Query:  240 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGED 590
            +YA ML EK++KH A  +LVNTGW+GG YG G R+ L +TR +I A   G L +    K  +FGLE+P  + GVP E+L PE TW+D  AYK   ++L   FK+NF+ F    + ED
Sbjct:  405 RYAEMLGEKIEKHDAKVFLVNTGWTGGEYGVGKRMNLGYTRAMIQAALSGELAKTETAKHDIFGLEVPLHVPGVPDEVLMPEQTWADKAAYKAKAIELANEFKENFKKF--ESVSED 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACHK (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus thuringiensis subsp. konkukian GN=pckA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            +YA ML EK++KH A  +LVNTGW+GG YG G R+ L +TR +I A   G L +    K  +FGLE+P  + GVP E+L PE TW+D  AYK   ++L   FK NF+ F       D+   D I   GP+
Sbjct:  405 RYAEMLGEKIEKHDAKVFLVNTGWTGGEYGVGKRMNLGYTRAMIQAALSGELAKTETAKHDIFGLEVPLHVPGVPDEVLMPEQTWADKAAYKAKAIELANEFKANFKKF-------DSVSEDIINLGGPI 527          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACCQ (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus cereus (strain Q1) GN=pckA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            +YA ML EK++KH A  +LVNTGW+GG YG G R+ L +TR +I A   G L +    K  +FGLE+P  + GVP E+L PE TW+D  AYK   ++L   FK NF+ F       D+   D I   GP+
Sbjct:  405 RYAEMLGEKIEKHDAKVFLVNTGWTGGEYGVGKRMNLGYTRAMIQAALSGELAKTETAKHDIFGLEVPLHVPGVPDEVLMPEQTWADKAAYKAKAIELANEFKANFKKF-------DSVSEDIINLGGPI 527          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACC7 (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus cereus (strain AH187) GN=pckA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            +YA ML EK++KH A  +LVNTGW+GG YG G R+ L +TR +I A   G L +    K  +FGLE+P  + GVP E+L PE TW+D  AYK   ++L   FK NF+ F       D+   D I   GP+
Sbjct:  405 RYAEMLGEKIEKHDAKVFLVNTGWTGGEYGVGKRMNLGYTRAMIQAALSGELAKTETAKHDIFGLEVPLHVPGVPDEVLMPEQTWADKAAYKAKAIELANEFKANFKKF-------DSVSEDIINLGGPI 527          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_YEAST (Phosphoenolpyruvate carboxykinase [ATP] OS=Saccharomyces cerevisiae GN=PCK1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.295e-25
Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  198 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGN-RIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKA-YKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 590
            +YA MLA KM +H A  +L+NTGW+G SY SG  R  L +TR I+D+IH G+L   +Y   P+F L++PT++ GVP+E+L+P   WS  ++ Y+  +  L  LF +NF      KI +D + T ++LAAGP F
Sbjct:  423 RYATMLATKMSQHKANAYLINTGWTGSSYVSGGKRCPLKYTRAILDSIHDGSLANETYETLPIFNLQVPTKVNGVPAELLNPAKNWSQGESKYRGAVTNLANLFVQNF------KIYQD-RATPDVLAAGPQF 548          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_DEIGD3.892e-2647.71Phosphoenolpyruvate carboxykinase [ATP] OS=Deinoco... [more]
PCKA_PELPD5.084e-2649.52Phosphoenolpyruvate carboxykinase [ATP] OS=Pelobac... [more]
PCKA2_SALRD8.671e-2647.29Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Salin... [more]
PCKA_LYSSC1.133e-2548.18Phosphoenolpyruvate carboxykinase [ATP] OS=Lysinib... [more]
PCKA_BACWK1.133e-2549.54Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_BACC21.932e-2547.01Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_BACHK2.523e-2544.62Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_BACCQ2.523e-2544.62Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_BACC72.523e-2544.62Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_YEAST3.295e-2544.36Phosphoenolpyruvate carboxykinase [ATP] OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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