DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_THETN (Phosphoenolpyruvate carboxykinase [ATP] OS=Thermoanaerobacter tengcongensis GN=pckA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.621e-25
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            YA ML EK++K+    +LVNTGWSGG YG G RI L +TR+++ A   G L +  +TK P+F L IP    GVPSEIL+P NTW D + Y  T  +L   F +NF+ +         ++++EI  AGP
Sbjct:  400 YAKMLGEKIEKYDTKVFLVNTGWSGGPYGIGKRINLEYTRKMVSAALKGELDKVEFTKDPIFNLNIPASCPGVPSEILNPRNTWKDKEEYDKTAKRLAQRFIENFQKY--------KEVSEEIKNAGP 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_EMENI (Phosphoenolpyruvate carboxykinase [ATP] OS=Emericella nidulans GN=acuF PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.587e-25
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSG-GSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            +YA MLA+K+ +H A  WL+NTGW G G+   G R  L +TR I+DAIH G L +A Y    VF L +P    GVP E+L+P+N+W+   ++ D + KL  LF +NF+ +        ++ T E++AAGP+
Sbjct:  431 RYARMLADKISQHKANAWLLNTGWVGAGATTGGKRCPLKYTRAILDAIHSGELAKAEYETYDVFNLHVPKSCPGVPDELLNPKNSWTATTSFSDEVNKLAKLFNENFQKYA-------DQATKEVIAAGPV 554          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GEOUR (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacter uraniireducens (strain Rf4) GN=pckA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L  K+ +H    WLVNTGWSGG+YG G+R+K+ ++R +++A   GTL    + K  VFGL+IP    GVP E+L+P N W+D  AY  T   L  +F+KNFE F
Sbjct:  411 YAELLKAKIARHKVNCWLVNTGWSGGAYGVGSRMKIGYSRALVNAALDGTLAAGQFEKDSVFGLDIPRACPGVPGEVLNPRNVWADKAAYDATAKDLVEMFRKNFEQF 518          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACSU (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus subtilis GN=pckA PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = -1
Query:  207 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAG 587
            YA ML +K+ +HGA  +LVNTGW+GG YG+G R+KL++TR ++ A   G L +A      +FGL IP  + GVP  IL PENTW++ + YK+  + L   FK+NF+ F +         TD I  AG
Sbjct:  406 YAEMLGKKIDEHGADVFLVNTGWTGGGYGTGERMKLSYTRAMVKAAIEGKLEDAEMITDDIFGLHIPAHVPGVPDHILQPENTWTNKEEYKEKAVYLANEFKENFKKFAH---------TDAIAQAG 523          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GRAFK (Phosphoenolpyruvate carboxykinase [ATP] OS=Gramella forsetii (strain KT0803) GN=pckA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.635e-24
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = -1
Query:  264 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 590
            +YA ML++KM+      WLVNTGW+GG YG G+R+KL +TR +I +   G L    Y K  +FGLE+P   EGVPSE+L+P NTW D  AY     +L   F+KNF  F
Sbjct:  409 EYAEMLSKKMKAADVNVWLVNTGWTGGPYGVGSRMKLKYTREMISSALEGKLENVDYEKHNIFGLEMPKTCEGVPSEVLNPRNTWKDQNAYDLKAKELSNFFRKNFRKF 517          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACA2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus amyloliquefaciens (strain FZB42) GN=pckA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.635e-24
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA ML  K+ +HG   +LVNTGW+GG YG G R+KL++TR ++ A   G L +   T   +FGL  P  + GVP E+L PENTWSD +AY +  L L   FK+NF+ F
Sbjct:  406 YAEMLGHKIDEHGVQVFLVNTGWTGGGYGVGERMKLSYTRAMVKAAIEGRLNQTDMTADSIFGLRSPVHVPGVPDEVLQPENTWSDKQAYNEKALFLANEFKENFKKF 513          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_THET8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pckA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            YA ML EK++KH    +LVNTGW+GG YG G R  L  TR ++ A   G L    Y + PVFG E+P E  GVP E+L+P  TW+D +AY     KL  LF++NF+ +        + +  E+  AGP
Sbjct:  406 YARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRETWADKEAYDQQARKLARLFQENFQKYA-------SGVAKEVAEAGP 526          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_THET2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            YA ML EK++KH    +LVNTGW+GG YG G R  L  TR ++ A   G L    Y + PVFG E+P E  GVP E+L+P  TW+D +AY     KL  LF++NF+ +        + +  E+  AGP
Sbjct:  406 YARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRETWADKEAYDQQARKLARLFQENFQKYA-------SGVAKEVAEAGP 526          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_ROSDO (Phosphoenolpyruvate carboxykinase [ATP] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = -1
Query:  261 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFV 587
            Y  +L EK+  HGAT WLVNTGW+GG+YG+G+R+ +  TR ++ A   G+L +A + K P FG ++P ++ GVP  +LDP  TW D +AY     KL  +F  NFE ++
Sbjct:  411 YGNLLREKIATHGATCWLVNTGWTGGAYGTGSRMPIKATRGLLTAALDGSLADAEFRKDPNFGFQVPVDVTGVPGILLDPRRTWDDAEAYDRQAAKLVKMFSDNFEQYL 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_MARMM (Phosphoenolpyruvate carboxykinase [ATP] OS=Maricaulis maris (strain MCS10) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = -1
Query:  255 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNH 590
            +Y A+L E + +H    WLVNTGW+GG+YG+GNR+ +  TR +++A   G+L  A++ + P FG  +P  ++GV + ILDP +TWSD  AY D   KL T+F +NF+ F  H
Sbjct:  407 EYGALLRELIAEHQVDCWLVNTGWTGGAYGTGNRMPIKATRALLNAAMDGSLNSAAFREDPNFGFMVPIAVDGVDASILDPRSTWSDKAAYDDRAAKLATMFIENFKTFEAH 518          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_THETN5.621e-2544.53Phosphoenolpyruvate carboxykinase [ATP] OS=Thermoa... [more]
PCKA_EMENI9.587e-2541.98Phosphoenolpyruvate carboxykinase [ATP] OS=Emerice... [more]
PCKA_GEOUR1.252e-2447.22Phosphoenolpyruvate carboxykinase [ATP] OS=Geobact... [more]
PCKA_BACSU1.252e-2444.09Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_GRAFK1.635e-2448.62Phosphoenolpyruvate carboxykinase [ATP] OS=Gramell... [more]
PCKA_BACA21.635e-2448.15Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_THET82.789e-2442.97Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus... [more]
PCKA_THET22.789e-2442.97Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus... [more]
PCKA_ROSDO2.789e-2444.95Phosphoenolpyruvate carboxykinase [ATP] OS=Roseoba... [more]
PCKA_MARMM2.789e-2444.64Phosphoenolpyruvate carboxykinase [ATP] OS=Maricau... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
back to top