DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_KLULA (Phosphoenolpyruvate carboxykinase [ATP] OS=Kluyveromyces lactis GN=PCK1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 57/132 (43.18%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSY-GSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEI-EGVPSEILDPENTWSDMKA-YKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYA MLAEKM +H A  WL+NTGW+G SY   G R  L +TR I+DAIH G+L +  Y   P+F L+IP  + + VP+ +L+P   W++ +A Y   +  L  LF +NF+ +        +K T+++LAAGP
Sbjct:  417 KYATMLAEKMAEHNANAWLINTGWTGSSYVAGGKRCPLKYTRAILDAIHDGSLAKEEYEVLPIFNLQIPKAVGDKVPASLLNPSKNWAEGEAKYTSNVKSLANLFVENFKTY-------QDKATEQVLAAGP 541          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GEOSM (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacter sp. (strain M21) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L +K+  H  + WLVNTGWSGG  G G R+K+A++R +++A   GTL   S+ K  VFGL+IP+   G+P++IL+P N WSD  AY  T  KL  +F+ NFE F
Sbjct:  410 YADLLGKKIASHKVSCWLVNTGWSGGGPGIGGRMKIAYSRALVNAALDGTLGAGSFVKDSVFGLDIPSACPGLPADILNPRNVWSDKSAYDATAHKLVEMFRHNFEQF 517          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_CAMLR (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  231 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKL 587
            YA +L EK+ KH    +LVNTGWSGG+YG G R+ +  TR  I+AI  G++    +    +F L +P E+ GV S++L+P NTW D KAY++T LKL  +F +NF+ + + K G + KL
Sbjct:  401 YAKLLGEKISKHNVNVYLVNTGWSGGAYGVGKRMSIKATRACINAILDGSIQNCEFENYDLFNLAVPKELAGVESKLLNPINTWEDKKAYEETKLKLAKMFIENFKRYEDVKEGAEFKL 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPB (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain BisB18) GN=pckA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.116e-24
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            Y  ML E + KHG   WLVNTGW+GG YG+G+R+ +  TR ++ A   G+L    +   P FG  +PT + GVPSEILDP  TW+D  A+  T  KL  +F+KNF  F
Sbjct:  410 YGNMLRELIAKHGVDCWLVNTGWTGGMYGTGHRMPIKVTRALLTAALDGSLRNVEFKTDPYFGFAVPTALPGVPSEILDPVKTWADKAAFDTTARKLVAMFQKNFTQF 517          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_NITSB (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitratiruptor sp. (strain SB155-2) GN=pckA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.116e-24
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  258 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNF---EGFVN 587
            YA +L EK+ KHG   +LVNTGW+GG YG G R+ L  TR  I+AI  G++ ++ Y   P+F LEIPT +EGV   IL+P NTW D +AY   L  L  LF  NF   EG+ N
Sbjct:  403 YAKLLGEKIDKHGVNVYLVNTGWTGGPYGIGQRMSLPATRSCINAILNGSITQSEYEILPIFNLEIPTYVEGVDPAILNPRNTWEDKEAYDRQLEHLAKLFIDNFKRYEGYGN 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_METEP (Phosphoenolpyruvate carboxykinase [ATP] OS=Methylobacterium extorquens (strain PA1) GN=pckA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.060e-23
Identity = 48/126 (38.10%), Postives = 78/126 (61.90%), Query Frame = -1
Query:  210 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAA 587
            Y  +L E M +HG   WLVNTGW+GG  G+G R+ +  TRR++ A   G+L +  + + P FG  +P E+ GV +++L P  TW++  A+ DT  +L T+F++NF+ F +H +  D +  + + AA
Sbjct:  412 YGNLLRELMAEHGVDCWLVNTGWTGGGVGTGRRMPIRVTRRLLSAALDGSLAQVEFRRDPYFGFSVPVEVPGVETQVLSPVETWTNKAAFADTATRLVTMFRENFKRFESH-VDADVRAAEPVAAA 536          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_METC4 (Phosphoenolpyruvate carboxykinase [ATP] OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=pckA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.060e-23
Identity = 48/126 (38.10%), Postives = 78/126 (61.90%), Query Frame = -1
Query:  210 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAA 587
            Y  +L E M +HG   WLVNTGW+GG  G+G R+ +  TRR++ A   G+L +  + + P FG  +P E+ GV +++L P  TW++  A+ DT  +L T+F++NF+ F +H +  D +  + + AA
Sbjct:  412 YGNLLRELMAEHGVDCWLVNTGWTGGGVGTGRRMPIRVTRRLLSAALDGSLAQVEFRRDPYFGFSVPVEVPGVETQVLSPVETWTNKAAFADTATRLVTMFRENFKRFESH-VDADVRAAEPVAAA 536          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_CANAL (Phosphoenolpyruvate carboxykinase [ATP] OS=Candida albicans GN=PCK1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.060e-23
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSY--GSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSD-MKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYA  LA+K+ +H A  WL+NTGW G S   G G R  L +TR I+DAIH G L +  Y K PVF L +PT   GVPSEIL+P   W+    ++   +  L T F +NF+ +        ++ T E+ AAGP
Sbjct:  427 KYAQQLADKISEHNANAWLLNTGWVGSSVAQGGGKRCPLKYTRAILDAIHSGELSKVEYEKVPVFNLNVPTSCPGVPSEILNPTKAWTQGTDSFNKEIKSLATKFAENFKTYA-------DQATAEVKAAGP 551          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACSK (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus clausii (strain KSM-K16) GN=pckA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            +YA ML +K++      +LVNTGW+GGSYG+G RIKLA+TR +++A   G L E      P+FGL +PT   GVP E+L P   W D  AY+ T L+L   F +NF  F   K        D +  AGP
Sbjct:  404 EYATMLGDKLENDDVQVFLVNTGWTGGSYGTGTRIKLAYTRAMVEAALQGKLDEIETVCDPIFGLYVPTHCPGVPDELLTPRRVWKDEAAYEATALQLAKQFHENFSAFPAAK--------DSVRLAGP 524          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_DINSH (Phosphoenolpyruvate carboxykinase [ATP] OS=Dinoroseobacter shibae (strain DFL 12) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = -1
Query:  234 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNK 587
            Y  +L EK+ KHGAT WLVNTGW+GG+YG+G+R+ +  TR ++ A   G+L +A++ K   FG ++P  + GV + +LDP  TW D  AY     KL  +F +NF  +V + I ED K
Sbjct:  411 YGKLLQEKIAKHGATCWLVNTGWTGGAYGTGSRMPIKATRALLTAALDGSLADATFRKDANFGFDVPVTVHGVDATLLDPRGTWEDSAAYDAQAQKLVEMFAENFAQYVPY-IDEDVK 527          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_KLULA2.789e-2443.18Phosphoenolpyruvate carboxykinase [ATP] OS=Kluyver... [more]
PCKA_GEOSM3.643e-2448.15Phosphoenolpyruvate carboxykinase [ATP] OS=Geobact... [more]
PCKA_CAMLR3.643e-2444.54Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_RHOPB8.116e-2447.22Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_NITSB8.116e-2449.56Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrati... [more]
PCKA_METEP1.060e-2338.10Phosphoenolpyruvate carboxykinase [ATP] OS=Methylo... [more]
PCKA_METC41.060e-2338.10Phosphoenolpyruvate carboxykinase [ATP] OS=Methylo... [more]
PCKA_CANAL1.060e-2343.18Phosphoenolpyruvate carboxykinase [ATP] OS=Candida... [more]
PCKA_BACSK1.384e-2343.41Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_DINSH1.808e-2344.07Phosphoenolpyruvate carboxykinase [ATP] OS=Dinoros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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