DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA1_SALRD (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Salinibacter ruber (strain DSM 13855) GN=pckA1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            YA +L +K+++H    WLVNTG +GG YG G+RI+L  TR ++DAI  GTL   + T+ PVFGL IP  + GVP  +L P  TW D +AY     +L   F  NFE +V        ++  E+ AAGP
Sbjct:  408 YAELLGQKIRRHDTDCWLVNTGMTGGPYGVGHRIELDHTRAMVDAILDGTLGTVARTRDPVFGLSIPDRVPGVPDSVLTPRQTWGDPQAYDQHARELVDAFADNFETYV-------EQVGTEVRAAGP 528          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS4 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  261 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFV 587
            Y  +L EK+ KHGAT WLVNTGW+GG+YG+G R+ +  TR ++ A   G+L    + + P FG E+P ++ GV +++LDP +TW+D  AY     KL  +F  NF  +V
Sbjct:  411 YGKLLQEKIAKHGATCWLVNTGWTGGAYGTGKRMPIKATRALLTAALDGSLSGVQFRRDPNFGFEVPVDLHGVDAKLLDPRSTWADPAAYDQQAKKLVEMFANNFAQYV 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  261 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFV 587
            Y  +L EK+ KHGAT WLVNTGW+GG+YG+G R+ +  TR ++ A   G+L    + + P FG E+P ++ GV +++LDP +TW+D  AY     KL  +F  NF  +V
Sbjct:  411 YGKLLQEKIAKHGATCWLVNTGWTGGAYGTGKRMPIKATRALLTAALDGSLSGVQFRRDPNFGFEVPVDLHGVDAKLLDPRSTWADPAAYDQQAKKLVEMFANNFAQYV 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GEOKA (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacillus kaustophilus GN=pckA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  258 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVN 590
            +YA ML +K+ +H    +LVNTGW+GG YG G+R+KLA+TR ++ A   G L      + P+FGL IP+ + GVP ++L P+NTW+D +AY+    +L   F+ NF  F +
Sbjct:  405 EYAEMLGQKIAEHNVRVFLVNTGWTGGPYGVGSRMKLAYTRAMVQAAVEGELDNVETVQDPIFGLAIPSHVPGVPDDVLQPQNTWADKQAYEQKAKELAQKFRANFRKFAH 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOS5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.084e-23
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -1
Query:  261 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFV 587
            Y  +L EK+   GAT WLVNTGW+GG+YG+G R+ +  TR ++ A   G+L   ++ K P FG E+PTE+ GV S +LDP +TW+D  AY     KL  +F  NF  +V
Sbjct:  411 YGKLLQEKITSLGATCWLVNTGWTGGAYGTGKRMPIKATRALLTAALDGSLANVTFRKDPNFGFEVPTELHGVDSSLLDPRSTWADPAAYDAQAKKLVEMFANNFAQYV 519          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GEOTN (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.084e-23
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  258 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVN 590
            +YA ML +K+ +H    +LVNTGW+GG YG G+R+KLA+TR ++ A   G L      + P+FGL IP  + GVP ++L P+NTW+D +AY+    +L   F+ NF+ F +
Sbjct:  405 EYAEMLGQKIAEHNVRVFLVNTGWTGGPYGVGSRMKLAYTRAMVQAAVEGELDNVETVQDPIFGLAIPAHVPGVPDDVLRPQNTWADKQAYEQKAKELAEKFRANFQKFAH 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACP2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus pumilus (strain SAFR-032) GN=pckA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.084e-23
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA ML +K+ +HGA  +LVNTGW+GG YG+G R+ LA TR ++ A   G L  A      +FGL IP  I GVP E+L P  TW D +AY++    L   FKKNF+ F
Sbjct:  406 YAEMLGKKIDEHGAKVFLVNTGWTGGGYGTGKRMNLAHTRAMVQAAIEGDLDNAEMITDDIFGLHIPLHIPGVPDEVLQPSKTWDDQEAYQEKAHFLANEFKKNFQKF 513          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAS1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pckA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  207 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAG 587
            YA +L   + KHG   +LVNTGW+GG YG G RI L +TR++++    G L +A Y K  +FGL+IP E+E VP  +L+P N WS  +AY+     L   FK NFE     K GED    DE+   G
Sbjct:  408 YADLLGNLIDKHGVDVYLVNTGWTGGKYGVGRRISLNYTRQMVNQAITGKLRDAEYVKDDMFGLDIPVEVEDVPQTLLNPINAWSKPEAYRTQAQDLINRFKSNFE-----KFGED---VDELAVNG 526          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPT (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain TIE-1) GN=pckA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            Y  ML E + KH    WLVNTGW+GG YG+G+R+ +  TR ++ A   G+L    +   P FG  +PT + GVPSEILDP  TW+D  A+  T  KL  +F+KNF  F       + ++  E+ AA P
Sbjct:  410 YGNMLRELIAKHNVDCWLVNTGWTGGIYGTGHRMPIKVTRALLTAALDGSLRNVEFRTDPYFGFAVPTALPGVPSEILDPVKTWADKAAFDTTARKLVGMFQKNFAKF-------EAQVDAEVRAAAP 530          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOPA (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris GN=pckA PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 587
            Y  ML E + KH    WLVNTGW+GG YG+G+R+ +  TR ++ A   G+L    +   P FG  +PT + GVPSEILDP  TW+D  A+  T  KL  +F+KNF  F       + ++  E+ AA P
Sbjct:  410 YGNMLRELIAKHNVDCWLVNTGWTGGIYGTGHRMPIKVTRALLTAALDGSLRNVEFRTDPYFGFAVPTALPGVPSEILDPVKTWADKAAFDTTARKLVGMFQKNFAKF-------EAQVDAEVRAAAP 530          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA1_SALRD1.808e-2343.75Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Salin... [more]
PCKA_RHOS42.361e-2344.04Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_RHOS12.361e-2344.04Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_GEOKA2.361e-2343.24Phosphoenolpyruvate carboxykinase [ATP] OS=Geobaci... [more]
PCKA_RHOS53.084e-2345.87Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodoba... [more]
PCKA_GEOTN3.084e-2343.24Phosphoenolpyruvate carboxykinase [ATP] OS=Geobaci... [more]
PCKA_BACP23.084e-2348.15Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_STAS15.261e-2344.09Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_RHOPT5.261e-2342.19Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_RHOPA5.261e-2342.19Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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