DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOP5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain BisA53) GN=pckA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            Y  ML E + KHG   WLVNTGW+GG YG+G+R+ +  TR ++ A   G+L    +   P FG  +PT + GVPS+ILDP  TW+D  A+  T  KL  +F+KNF  F
Sbjct:  410 YGNMLRELIAKHGVDCWLVNTGWTGGIYGTGSRMPIKVTRALLTAALNGSLRNVEFRTDPYFGFAVPTALPGVPSDILDPVKTWADKAAFDVTARKLVGMFQKNFSKF 517          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_OLICO (Phosphoenolpyruvate carboxykinase [ATP] OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=pckA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  204 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTD-EILAAGP 587
            Y  ML + + KH    WLVNTGW+GG +G GNR+ +  TR ++ A   G+L   ++   P FG  +PT + GVPS+ILDP NTW+D   +K T   L ++F++NF  F         KL D ++LAA P
Sbjct:  411 YGEMLRKLIAKHNVDCWLVNTGWTGGKFGIGNRMPIKVTRALLTAALDGSLRNVTFRTDPYFGFAVPTALPGVPSDILDPINTWADKADFKKTAQALVSMFRQNFTKF--------EKLVDADVLAAAP 531          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_NEUCR (Phosphoenolpyruvate carboxykinase [ATP] OS=Neurospora crassa GN=pck-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGN-RIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTW-SDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            +YA MLAEK++ H A  WL+NTGW G  +  G  R  L +TR I+DAIH G L    Y    VF L++P    GVPSE+L+P+  W +   ++   + KLG LF +NF+ +       +++ T++++ AGP+
Sbjct:  436 RYAKMLAEKIENHNANAWLLNTGWVGAGFAQGGKRCPLKYTRAILDAIHSGELANVEYENYEVFNLQVPKSCPGVPSELLNPKTAWTAGANSFDTEVKKLGGLFLENFKKY-------ESEATEDVIKAGPV 560          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA2_MOOTA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=pckA2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  201 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 587
            YA +L E++ KHGA+ +LVNTGW+GG  G G R+ L +TR ++ A   G L    +   PVFG+ +PT   GVP+E+L+P +TW D + Y     KL  LF +NF  F          + +EI AAGP+
Sbjct:  404 YADLLGERIAKHGASVYLVNTGWTGGPSGIGRRMSLPYTRAMVRAAIKGELEGVEFVPDPVFGILVPTSCPGVPAEVLNPRHTWQDKEKYDAMARKLAGLFAENFTKF--------RDVPEEIRAAGPV 524          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_SILST (Phosphoenolpyruvate carboxykinase [ATP] OS=Silicibacter sp. (strain TM1040) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = -1
Query:  234 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNK 587
            Y  +L EK+  HGAT WLVNTGW+GG+YG+G+R+ +  TR ++ A   G+L  A + K P FG ++P    GV   +LDP  TW D  AY     KL  +F  NFE ++ + I ED K
Sbjct:  411 YGNLLREKIAAHGATCWLVNTGWTGGAYGTGSRMPIKATRALLTAALDGSLANAEFRKDPNFGFDVPVAAPGVAEVLLDPRRTWDDKAAYDAQAEKLVQMFSDNFEQYLPY-IDEDVK 527          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_FLAJ1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            KYA ML++KM+      WL+NTGW+GG+YG+G+R+KL +TR +I A   G L    Y    VFG+  P     VPSEIL+P NTW D   Y    L+L   FK NF  F       +     EILA  P+
Sbjct:  410 KYAEMLSKKMKDADVKVWLINTGWTGGAYGTGSRMKLKYTRAMITAALNGELDNVEYVNHKVFGIAKPQSCPNVPSEILNPRNTWEDKDLYDKKALELAQKFKANFAKF-------EEFANAEILAGAPI 532          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_BACLD (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  258 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVN 587
            YA ML  K+ +HG   +LVNTGW+GG YG+G R+ LA+TR ++ A   G L +A      +FGL  P  + GVP ++LDP  TW+D   Y++  + L   FK+NF+ F N
Sbjct:  406 YAEMLGRKIDEHGVGVFLVNTGWTGGGYGTGERMSLAYTRAMVQAAIEGELDKAEMRTDRIFGLHSPVHVPGVPDQVLDPAKTWTDENEYEEKAIHLAKAFKQNFKKFSN 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA1_MOOTA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=pckA1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E++ +H A+ +LVNTGW+GG YG+G R+ L +TR ++ A   G L +  +T  PVFG  +P    GVP+EIL+P NTW++ + Y     KL +LF++NF  F
Sbjct:  404 YANLLGERIARHNASVYLVNTGWTGGPYGTGRRMSLPYTRAMVRAALNGELDKVEFTPDPVFGFLVPKACPGVPAEILNPRNTWAETEKYDAMARKLASLFRENFAKF 511          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STACT (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus carnosus (strain TM300) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.999e-22
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  234 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNK 590
            +YA +L + + KH    +LVNTGW+GG YG G RI L +TRR++DA   G L  A + K  VFGL +P +I+ VP  IL P N WS+  AY++    L + F +NF+     K G+D+K
Sbjct:  407 RYAELLGQLIDKHEVEVYLVNTGWTGGKYGVGRRISLKYTRRMVDAAIKGELKNAEFEKDEVFGLSVPKDIKDVPKSILQPINAWSNQDAYREQAQDLISRFVENFK-----KFGDDSK 520          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAR (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain MRSA252) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.999e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKTQAEDLIQRFEKNFEKF 515          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_RHOP55.261e-2346.30Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_OLICO5.261e-2341.86Phosphoenolpyruvate carboxykinase [ATP] OS=Oligotr... [more]
PCKA_NEUCR8.973e-2339.39Phosphoenolpyruvate carboxykinase [ATP] OS=Neurosp... [more]
PCKA2_MOOTA1.172e-2241.86Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Moore... [more]
PCKA_SILST1.531e-2244.07Phosphoenolpyruvate carboxykinase [ATP] OS=Silicib... [more]
PCKA_FLAJ11.531e-2243.08Phosphoenolpyruvate carboxykinase [ATP] OS=Flavoba... [more]
PCKA_BACLD1.531e-2243.64Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA1_MOOTA1.531e-2244.44Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Moore... [more]
PCKA_STACT1.999e-2243.70Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAR1.999e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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