DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAB (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.999e-22
Identity = 59/123 (47.97%), Postives = 71/123 (57.72%), Query Frame = -1 
Query:  234 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF---VNH--KIGEDNK 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F   V H  K G  NK
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKFGEKVEHIAKKGSFNK 530
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RHOP2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodopseudomonas palustris (strain HaA2) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.999e-22
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            Y  ML E + KH    WLVNTGW+GG YG+G+R+ +  TR ++ A   G+L    +   P FG  +PT + GVPS+ILDP  TW+D  A+  T  KL  +F+KNF  F
Sbjct:  410 YGNMLRELIAKHDVDCWLVNTGWTGGIYGTGHRMPIKVTRALLTAALDGSLRNVEFRTDPYFGFAVPTSLHGVPSDILDPVKTWADKAAFDATARKLVGMFQKNFAKF 517
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAU (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAT (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAN (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain N315) GN=pckA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAM (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pckA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAE (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain Newman) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAC (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain COL) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAA9 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain JH9) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
[Close]
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAA8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain NCTC 8325) GN=pckA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP EIE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_STAAB1.999e-2247.97Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_RHOP21.999e-2245.37Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodops... [more]
PCKA_STAAU2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAT2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAN2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAM2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAE2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAAC2.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAA92.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_STAA82.611e-2249.07Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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