DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAAS (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain MSSA476) GN=pckA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L E +  H    +LVNTGW+GG YG G RI L +TR++++    G L  A YTK   FGL IP +IE VP  IL+P N WSD + YK     L   F+KNFE F
Sbjct:  408 YADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVKIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKF 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_AGRRK (Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=pckA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.921e-22
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -1
Query:  246 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIG 590
            +Y  +L E + +HGA  WLVNTGW+GG+YG+G R+ +  TR ++ A   G L +A +   P FG  +P  +EGV S ILDP +TW+D +AY     KL  +F  NF  F +H  G
Sbjct:  408 EYGNLLKELIARHGAGCWLVNTGWTGGAYGTGRRMPIKATRALLAAALKGDLDKAEFRIDPNFGFAVPVAVEGVDSAILDPRSTWADGQAYDAQAAKLVQMFVSNFAKFEDHVDG 522          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_STAHJ (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pckA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  264 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 590
            KYA +L E + KH    +LVNTGW+GG YG G RI L +TR ++D    G L  A +TK   FGL IPTE+E VP  IL+P N WSD   Y+     L   F++NF+ F
Sbjct:  407 KYADLLGELIDKHDVDVYLVNTGWTGGKYGVGRRISLHYTRYMVDQAIKGKLKNAEFTKDEKFGLSIPTEMEDVPKTILNPINAWSDSDKYRAQADDLIQRFEENFKKF 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_SILPO (Phosphoenolpyruvate carboxykinase [ATP] OS=Silicibacter pomeroyi GN=pckA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -1
Query:  234 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNK 587
            Y  +L +K+ +HGAT WLVNTGW+GG+YG G+R+ +  TR ++ A   G+L  A + K   FG ++P  + GV   +LDP  TW D  A+     KL  +F  NFE +V + I ED K
Sbjct:  411 YGNLLRDKIARHGATCWLVNTGWTGGAYGVGSRMPIKATRALLTAALNGSLNNAEFRKDGNFGFDVPVSVPGVAEVLLDPRRTWDDQGAFDKQAAKLVQMFADNFEQYVPY-IDEDVK 527          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_PARDP (Phosphoenolpyruvate carboxykinase [ATP] OS=Paracoccus denitrificans (strain Pd 1222) GN=pckA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  210 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAA 587
            Y  +L EK+ K GA  WLVNTGW+GG++G+G R+ +  TR ++ A   G+L +A + K P FG E+P  + GV  ++LDP  TW+D  AY     KL  +F  NF  +        +K+ D++ AA
Sbjct:  411 YGKLLQEKIAKTGAACWLVNTGWTGGAFGTGKRMPIKATRALLTAALDGSLNDAQFRKDPNFGFEVPVSVPGVEDKLLDPRQTWTDGAAYDAQARKLVGMFSDNFAQYA-------DKIDDDVRAA 529          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_FUSNN (Phosphoenolpyruvate carboxykinase [ATP] OS=Fusobacterium nucleatum subsp. nucleatum GN=pckA PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  270 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFE 587
            YA ML E+++KH    +L+NTGWSGG+YG+G RI L +TR ++ A+  G    A Y    +F L+IP    GVPSEI++P +TW D   Y     KL  LF  NF+
Sbjct:  401 YAEMLGERLKKHNTKVYLINTGWSGGAYGTGKRINLKYTRAMVTAVLNGYFDNAEYKHDDIFNLDIPQSCPGVPSEIMNPIDTWQDRDKYIIAAKKLANLFYNNFK 506          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_AMOA5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Amoebophilus asiaticus (strain 5a2) GN=pckA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  273 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNF 590
            +YA MLA+K++K+  T WLVNTGW GG YG G RI L +TR ++ A   G L +A + K  +F L IP     VP+ IL+P NTW+ +K Y+    KL   F  NF
Sbjct:  410 RYATMLADKLEKYEVTVWLVNTGWIGGGYGIGKRIDLNYTRAMVTAALSGELAKAGFEKDAIFNLSIPNACPEVPTHILNPSNTWNSVKEYELEAHKLMEAFASNF 515          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_CAMJE (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter jejuni GN=pckA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  246 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIG 587
            YA +L EK++KH    +LVNTGWSGGSYG G R+ +  TR  I+AI  G++ +  +    VF L IP  +EGV S +L+P NTW D  AY  T  KL  +F +NF+ + + K G
Sbjct:  401 YARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGSITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRYEDVKEG 514          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_EUBR3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=pckA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.431e-21
Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYAA L +KM+K GA  +LVNTGW+G    +G RI +  TR IIDAI  G +L A   K P+F  E+PTE+ GV S ILDP +T++D   ++     L   F KNF  +  ++ G+       ++AAGP
Sbjct:  414 KYAAELVKKMEKSGAKAYLVNTGWNG----TGKRITIKDTRGIIDAILSGDILNAPTKKIPMFDFEVPTELPGVDSGILDPRDTYADASEWEAKAKDLAERFNKNFVKYTTNEAGK------ALVAAGP 532          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_SELRU (Phosphoenolpyruvate carboxykinase [ATP] OS=Selenomonas ruminantium GN=pckA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYA  L +KM+ +G   +LVNTGW+G    SG RI +  TR IIDAIH G + +A   K P F LE+PTE+EGV + ILDP++T+++   ++     L   F KNF+     K  ++N+    ++AAGP
Sbjct:  418 KYAEELVKKMEANGTKAYLVNTGWNG----SGKRISIKDTRGIIDAIHSGAIKKAPTKKIPFFNLEVPTELEGVDTNILDPKDTYANPADWEAKAKDLAQRFIKNFD-----KYTKNNEAGKALVAAGP 537          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_STAAS7.596e-2248.15Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_AGRRK9.921e-2243.48Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobac... [more]
PCKA_STAHJ1.296e-2147.71Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl... [more]
PCKA_SILPO1.296e-2142.37Phosphoenolpyruvate carboxykinase [ATP] OS=Silicib... [more]
PCKA_PARDP1.296e-2139.68Phosphoenolpyruvate carboxykinase [ATP] OS=Paracoc... [more]
PCKA_FUSNN1.296e-2145.28Phosphoenolpyruvate carboxykinase [ATP] OS=Fusobac... [more]
PCKA_AMOA51.296e-2146.23Phosphoenolpyruvate carboxykinase [ATP] OS=Amoebop... [more]
PCKA_CAMJE3.770e-2145.61Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_EUBR36.431e-2143.41Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacte... [more]
PCKA_SELRU8.399e-2142.64Phosphoenolpyruvate carboxykinase [ATP] OS=Selenom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
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