DN617426

Overview
NameDN617426
Unique NameDN617426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.745e-63
Identity = 114/158 (72.15%), Postives = 129/158 (81.65%), Query Frame = 2
Query:  116 AVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            AV +PE V   V  SI  S  RR LGY SC TGNPIDDCWRCD  W+  R+ LA+CAIGFG+NA+GGRDGR YVV+DP D + VNPKPGTLR+AVIQ+EPLWI+F RDM I LKEELIMNSFKTIDGRG +VHIA G CITIQ+VTNIIIHG++IHDC
Sbjct:   36 AVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDC 193          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.078e-63
Identity = 115/163 (70.55%), Postives = 135/163 (82.82%), Query Frame = 2
Query:  101 LISASAVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            L+  S++ DPELVV +VH+SINAS  RRNLGYLSCG+GNPID      P   K     + CAIGFGKNA+GG++GRIYVVTD G+ D VNPKPGTLR+AVIQDEPLWIIF RDM I+LK+EL+MNS+KTIDGRGASVHI+GGPCITI + +NIIIHG+NIHDC
Sbjct:   16 LLVISSIQDPELVVQDVHRSINASLTRRNLGYLSCGSGNPIDRLLAMQPQLGKKSPAFSYCAIGFGKNAIGGKNGRIYVVTDSGNDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVIQLKQELVMNSYKTIDGRGASVHISGGPCITIHHTSNIIIHGINIHDC 178          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 112/166 (67.47%), Postives = 128/166 (77.11%), Query Frame = 2
Query:  104 ISASAVPDPELVVHEVHKSINAS------RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            ++  AV DP+ V HEV   I+ S      RR LG+ SCG GN IDDCWRCD NW KNR+ LADC +GFG  A GGR+G  YVVTD  D DVVNPKPGTLR+AVIQ EPLWIIF RDM I+LK+ELIMNSFKTID RGA+VHIA G CITIQ +TN+I+HGL+IHDC
Sbjct:   63 LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIHDC 228          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.163e-57
Identity = 103/163 (63.19%), Postives = 123/163 (75.46%), Query Frame = 2
Query:  122 PDPELVVHEVHKSINAS--RRNL-------GYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            PDPELV ++V   +NAS  RR         G   C TGNPIDDCW+CDPNW  NRQ LADC IGFG+ A+GG+ G+ Y VTD  D D VNPKPGTLRY VIQ+EPLWI+F  +M I+LK+ELI NS+KT+DGRGA+VHI GG CIT+QYV+NIIIH ++IH C
Sbjct:   36 PDPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHC 198          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.823e-51
Identity = 97/170 (57.06%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  122 PDPELVVHEVHKSINAS--RRNLGY-------------LSCGTGNPIDDCWRC-DPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            P P+ V   V +S+N S  RR L                SC TGNPIDDCWRC D +W  NRQRLADC+IGFG   +GG++G+IYVVTD  D +  NP PGTLRY VIQ+EPLWI+F+ +M IRLK+ELI+NS+KT+DGRG++VHI G  C+T+QYV +IIIH L+I+DC
Sbjct:   35 PSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDC 204          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.586e-48
Identity = 89/125 (71.20%), Postives = 105/125 (84.00%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            NPID CWR +P W  NR+ LADCA+GFGK+AVGG+ G IYVVT+P D D  NP+PGTLRYAVIQ +PLWI FARDM I L+ ELIMNS+KTIDGRGA V IA GPCITIQ+V+++IIHG++IHDC
Sbjct:   37 NPIDSCWRRNPYWASNRRALADCAVGFGKSAVGGKYGSIYVVTNPSD-DPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDC 160          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 90/143 (62.94%), Postives = 106/143 (74.13%), Query Frame = 2
Query:  164 NASRRNLGYLS----CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            N++RR LG       C   NPID CWRCDPNW  NR++LADCA+GFG  A+GG+DG  YVVTD  D D  +PKPGTLR+AVIQ EPLWIIF R M IRL +E+IM S KTID RG +VHI  G  IT+QY+ N+IIHGL+IHD
Sbjct:   81 NSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTDNSD-DYNDPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKGAGITLQYIKNVIIHGLHIHD 222          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.662e-47
Identity = 87/158 (55.06%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  110 ASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            A A+P P +V      S   +  +        GNPID+CWRCD NW+ NR+ LADCA+GFG++++GGR G  Y VTD GD + +NP PGTLRYA  QD+PLWIIF RDM I+LK++L + S+KTIDGRG +V IA GPC+T+  V+NIII+ L IHDC
Sbjct:   19 AFAIPKPPIVRR---LSTTVTSNSTASSCSANGNPIDECWRCDENWKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDC 173          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.144e-45
Identity = 84/128 (65.62%), Postives = 98/128 (76.56%), Query Frame = 2
Query:  197 CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            C   N ID CWRCDPNW +NRQ++ADCA+GFG NA+GG+ GRIYVVTD  D DVV+PKPGTLRY VIQ EPLWIIF ++M I+L  ELI+ S KTIDGRG +VHI  G  I IQ  +NIII  L IH+
Sbjct:   42 CRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHN 169          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.370e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  122 PDPELVVHEVHKSI------NASRRNLGYLSCG---TGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            P PE V +  +K++      N++RRNL     G     NPID CWRC  NW  NR+ L  C  GFG+   GG  G IYVVTDP D  + +PK GTLR+ VIQD PLWIIF + M IRLK+ELI+N+ KTIDGRGA+V IAGG  +T+Q+V N+IIHG++IHD
Sbjct:   48 PHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLGQCLATNPIDRCWRCKKNWSANRKDLVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHD 209          
The following BLAST results are available for this feature:
BLAST of DN617426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL20_ARATH1.745e-6372.15Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL18_SOLLC5.078e-6370.55Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL9_ARATH9.576e-6267.47Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL12_ARATH4.163e-5763.19Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH5.823e-5157.06Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL2_ARATH1.586e-4871.20Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL59_SOLLC3.906e-4762.94Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL21_ARATH6.662e-4755.06Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL_TOBAC8.144e-4565.63Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL_LILLO2.370e-4454.32Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617426 ID=DN617426; Name=DN617426; organism=Citrus sinensis; type=EST; length=585bp
CAACAACAAGAAGAGGAAATTAAACCGGAAAAGAAAAAAAAAAATGGCAA
TCCCTTCTCCTTCTCTTAGCATCTTCCTCCTCTTTCTCATGACCCCAGCT
CTCATTTCAGCTTCCGCAGTTCCGGACCCAGAATTAGTCGTACACGAAGT
ACACAAGAGCATCAATGCGTCTAGGAGGAACCTAGGTTACTTGTCTTGCG
GAACCGGCAATCCGATTGACGATTGCTGGCGGTGCGACCCCAACTGGGAG
AAGAACCGGCAAAGGCTGGCGGATTGTGCGATTGGGTTCGGCAAGAATGC
GGTTGGTGGGCGTGATGGTAGAATTTATGTGGTCACTGACCCTGGTGACT
ATGATGTCGTAAATCCTAAACCCGGAACTCTAAGGTACGCTGTGATCCAA
GATGAGCCGTTATGGATCATTTTCGCTCGTGATATGACCATCAGATTGAA
GGAAGAGTTGATCATGAACTCTTTCAAGACCATCGACGGTCGGGGAGCCA
GTGTGCACATAGCTGGTGGTCCATGCATTACCATACAGTACGTGACCAAC
ATTATTATCCATGGGTTAAACATACACGACTGTAA
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